Inferring species trees directly from biallelic genetic markers: bypassing gene trees in a full coalescent analysis
The multispecies coalescent provides an elegant theoretical framework for estimating
species trees and species demographics from genetic markers. However, practical …
species trees and species demographics from genetic markers. However, practical …
The multispecies coalescent model and species tree inference
The multispecies coalescent (MSC) is an extension of the single-population coalescent
model of population genetics to the case of multiple species. The MSC naturally …
model of population genetics to the case of multiple species. The MSC naturally …
Bayesian inference of species trees from multilocus data
J Heled, AJ Drummond - Molecular biology and evolution, 2009 - academic.oup.com
Until recently, it has been common practice for a phylogenetic analysis to use a single gene
sequence from a single individual organism as a proxy for an entire species. With …
sequence from a single individual organism as a proxy for an entire species. With …
Estimating species trees using multiple-allele DNA sequence data
Several techniques, such as concatenation and consensus methods, are available for
combining data from multiple loci to produce a single statement of phylogenetic …
combining data from multiple loci to produce a single statement of phylogenetic …
Genes with minimal phylogenetic information are problematic for coalescent analyses when gene tree estimation is biased
The development and application of coalescent methods are undergoing rapid changes.
One little explored area that bears on the application of gene-tree-based coalescent …
One little explored area that bears on the application of gene-tree-based coalescent …
Challenges in species tree estimation under the multispecies coalescent model
B Xu, Z Yang - Genetics, 2016 - academic.oup.com
The multispecies coalescent (MSC) model has emerged as a powerful framework for
inferring species phylogenies while accounting for ancestral polymorphism and gene tree …
inferring species phylogenies while accounting for ancestral polymorphism and gene tree …
Coalescent methods for estimating phylogenetic trees
We review recent models to estimate phylogenetic trees under the multispecies coalescent.
Although the distinction between gene trees and species trees has come to the fore of …
Although the distinction between gene trees and species trees has come to the fore of …
Species tree inference with BPP using genomic sequences and the multispecies coalescent
The multispecies coalescent provides a natural framework for accommodating ancestral
genetic polymorphism and coalescent processes that can cause different genomic regions …
genetic polymorphism and coalescent processes that can cause different genomic regions …
Estimating phylogenetic trees from genome‐scale data
The heterogeneity of signals in the genomes of diverse organisms poses challenges for
traditional phylogenetic analysis. Phylogenetic methods known as “species tree” methods …
traditional phylogenetic analysis. Phylogenetic methods known as “species tree” methods …
Coalescent methods for estimating species trees from phylogenomic data
Genome‐scale sequence data have become increasingly available in the phylogenetic
studies for understanding the evolutionary histories of species. However, it is challenging to …
studies for understanding the evolutionary histories of species. However, it is challenging to …