Complete protein characterization using top-down mass spectrometry and ultraviolet photodissociation

JB Shaw, W Li, DD Holden, Y Zhang… - Journal of the …, 2013 - ACS Publications
The top-down approach to proteomics offers compelling advantages due to the potential to
provide complete characterization of protein sequence and post-translational modifications …

High-throughput analysis of intact human proteins using UVPD and HCD on an orbitrap mass spectrometer

TP Cleland, CJ DeHart, RT Fellers… - Journal of proteome …, 2017 - ACS Publications
The analysis of intact proteins (top-down strategy) by mass spectrometry has great potential
to elucidate proteoform variation, including patterns of post-translational modifications …

Implementation of ultraviolet photodissociation on a benchtop Q exactive mass spectrometer and its application to phosphoproteomics

KL Fort, A Dyachenko, CM Potel, E Corradini… - Analytical …, 2016 - ACS Publications
Proteomics applications performed on the popular benchtop Q Exactive Orbitrap mass
spectrometer have so far relied exclusively on higher collision-energy dissociation (HCD) …

Top down proteomics: facts and perspectives

AD Catherman, OS Skinner, NL Kelleher - Biochemical and biophysical …, 2014 - Elsevier
The rise of the “Top Down” method in the field of mass spectrometry-based proteomics has
ushered in a new age of promise and challenge for the characterization and identification of …

[HTML][HTML] Ultra high resolution linear ion trap Orbitrap mass spectrometer (Orbitrap Elite) facilitates top down LC MS/MS and versatile peptide fragmentation modes

A Michalski, E Damoc, O Lange, E Denisov… - Molecular & Cellular …, 2012 - ASBMB
Although only a few years old, the combination of a linear ion trap with an Orbitrap analyzer
has become one of the standard mass spectrometers to characterize proteins and …

Photodissociation of Conformer-Selected Ubiquitin Ions Reveals Site-Specific Cis/Trans Isomerization of Proline Peptide Bonds

S Warnke, C Baldauf, MT Bowers, K Pagel… - Journal of the …, 2014 - ACS Publications
Ultraviolet photodissociation (UVPD) of gas-phase proteins has attracted increased attention
in recent years. This growing interest is largely based on the fact that, in contrast to slow …

[HTML][HTML] Thorough performance evaluation of 213 nm ultraviolet photodissociation for top-down proteomics

L Fornelli, K Srzentić, TK Toby, PF Doubleday… - Molecular & Cellular …, 2020 - ASBMB
Top-down proteomics studies intact proteoform mixtures and offers important advantages
over more common bottom-up proteomics technologies, as it avoids the protein inference …

Ultraviolet photodissociation mass spectrometry for analysis of biological molecules

JS Brodbelt, LJ Morrison, I Santos - Chemical reviews, 2019 - ACS Publications
The development of new ion-activation/dissociation methods continues to be one of the most
active areas of mass spectrometry owing to the broad applications of tandem mass …

[HTML][HTML] Mass spectrometry-based proteomics using Q Exactive, a high-performance benchtop quadrupole Orbitrap mass spectrometer

A Michalski, E Damoc, JP Hauschild, O Lange… - Molecular & cellular …, 2011 - ASBMB
Mass spectrometry-based proteomics has greatly benefitted from enormous advances in
high resolution instrumentation in recent years. In particular, the combination of a linear ion …

Improved protein and PTM characterization with a practical electron-based fragmentation on Q-TOF instruments

JS Beckman, VG Voinov, M Hare… - Journal of the …, 2021 - ACS Publications
Electron-based dissociation (ExD) produces uncluttered mass spectra of intact proteins
while preserving labile post-translational modifications. However, technical challenges have …