[PDF][PDF] A roadmap for the computation of persistent homology

N Otter, MA Porter, U Tillmann, P Grindrod… - EPJ Data Science, 2017 - Springer
Persistent homology (PH) is a method used in topological data analysis (TDA) to study
qualitative features of data that persist across multiple scales. It is robust to perturbations of …

[HTML][HTML] Phat–persistent homology algorithms toolbox

U Bauer, M Kerber, J Reininghaus, H Wagner - Journal of symbolic …, 2017 - Elsevier
Phat is an open-source C++ library for the computation of persistent homology by matrix
reduction, targeted towards developers of software for topological data analysis. We aim for …

[PDF][PDF] Ripser. py: A lean persistent homology library for python

C Tralie, N Saul, R Bar-On - Journal of Open Source Software, 2018 - joss.theoj.org
Topological data analysis (TDA)(Edelsbrunner & Harer, 2010),(Carlsson, 2009) is a field
focused on understanding the shape and structure of data by computing topological …

Persistence images: A stable vector representation of persistent homology

H Adams, T Emerson, M Kirby, R Neville… - Journal of Machine …, 2017 - jmlr.org
Many data sets can be viewed as a noisy sampling of an underlying space, and tools from
topological data analysis can characterize this structure for the purpose of knowledge …

Clear and compress: Computing persistent homology in chunks

U Bauer, M Kerber, J Reininghaus - … in Data Analysis and Visualization III …, 2014 - Springer
We present a parallel algorithm for computing the persistent homology of a filtered chain
complex. Our approach differs from the commonly used reduction algorithm by first …

Persistent homology analysis for materials research and persistent homology software: HomCloud

I Obayashi, T Nakamura, Y Hiraoka - journal of the physical society of …, 2022 - journals.jps.jp
This paper introduces persistent homology, which is a powerful tool to characterize the
shape of data using the mathematical concept of topology. We explain the fundamental idea …

Convergence rates for persistence diagram estimation in topological data analysis

F Chazal, M Glisse, C Labruère… - … on Machine Learning, 2014 - proceedings.mlr.press
Computational topology has recently seen an important development toward data analysis,
giving birth to Topological Data Analysis. Persistent homology appears as a fundamental …

Efficient computation of persistent homology for cubical data

H Wagner, C Chen, E Vuçini - Topological methods in data analysis and …, 2011 - Springer
In this paper we present an efficient framework for computation of persistent homology of
cubical data in arbitrary dimensions. An existing algorithm using simplicial complexes is …

Stable vectorization of multiparameter persistent homology using signed barcodes as measures

D Loiseaux, L Scoccola, M Carrière… - Advances in …, 2024 - proceedings.neurips.cc
Persistent homology (PH) provides topological descriptors for geometric data, such as
weighted graphs, which are interpretable, stable to perturbations, and invariant under, eg …

Using persistent homology and dynamical distances to analyze protein binding

V Kovacev-Nikolic, P Bubenik, D Nikolić… - Statistical applications in …, 2016 - degruyter.com
Persistent homology captures the evolution of topological features of a model as a
parameter changes. The most commonly used summary statistics of persistent homology are …