[HTML][HTML] Incongruence between gene trees and species trees and phylogenetic signal variation in plastid genes
The current classification of angiosperms is based primarily on concatenated plastid
markers and maximum likelihood (ML) inference. This approach has been justified by the …
markers and maximum likelihood (ML) inference. This approach has been justified by the …
Characterizing gene tree conflict in plastome-inferred phylogenies
Evolutionary relationships among plants have been inferred primarily using chloroplast data.
To date, no study has comprehensively examined the plastome for gene tree conflict. Using …
To date, no study has comprehensively examined the plastome for gene tree conflict. Using …
Plastome phylogenetics: 30 years of inferences into plant evolution
From restriction site analyses to whole plastid genome sequences, our understanding of
green plant (Viridiplantae;~ 500,000 extant species) evolutionary relationships over the past …
green plant (Viridiplantae;~ 500,000 extant species) evolutionary relationships over the past …
Plastid genomes and deep relationships among the commelinid monocot angiosperms
The commelinid monocots comprise the orders Arecales (A), Commelinales (C), Poales
sensu Angiosperm Phylogeny Group III (APGIII)(P), Zingiberales (Z), plus the unplaced …
sensu Angiosperm Phylogeny Group III (APGIII)(P), Zingiberales (Z), plus the unplaced …
Plastid genome sequencing, comparative genomics, and phylogenomics: current status and prospects
L Gao, YJ SU, T Wang - Journal of Systematics and Evolution, 2010 - Wiley Online Library
More than 190 plastid genomes have been completely sequenced during the past two
decades due to advances in DNA sequencing technologies. Based on this unprecedented …
decades due to advances in DNA sequencing technologies. Based on this unprecedented …
Analysis of 81 genes from 64 plastid genomes resolves relationships in angiosperms and identifies genome-scale evolutionary patterns
Angiosperms are the largest and most successful clade of land plants with> 250,000 species
distributed in nearly every terrestrial habitat. Many phylogenetic studies have been based on …
distributed in nearly every terrestrial habitat. Many phylogenetic studies have been based on …
Inferring the higher‐order phylogeny of mosses (Bryophyta) and relatives using a large, multigene plastid data set
• Premise of the study: Investigating the early diversification of major clades requires well‐
corroborated and accurate phylogenetic inferences. We examined the performance of a …
corroborated and accurate phylogenetic inferences. We examined the performance of a …
Plastid phylogenomics and green plant phylogeny: almost full circle but not quite there
A study in BMC Evolutionary Biology represents the most comprehensive effort to clarify the
phylogeny of green plants using sequences from the plastid genome. This study highlights …
phylogeny of green plants using sequences from the plastid genome. This study highlights …
Plastid phylogenomic insights into relationships of all flowering plant families
Background Flowering plants (angiosperms) are dominant components of global terrestrial
ecosystems, but phylogenetic relationships at the familial level and above remain only …
ecosystems, but phylogenetic relationships at the familial level and above remain only …
Using plastid genome-scale data to resolve enigmatic relationships among basal angiosperms
Although great progress has been made in clarifying deep-level angiosperm relationships,
several early nodes in the angiosperm branch of the Tree of Life have proved difficult to …
several early nodes in the angiosperm branch of the Tree of Life have proved difficult to …