Diffusion geometry unravels the emergence of functional clusters in collective phenomena

M De Domenico - Physical review letters, 2017 - APS
Collective phenomena emerge from the interaction of natural or artificial units with a
complex organization. The interplay between structural patterns and dynamics might induce …

Organization and self-assembly away from equilibrium: Toward thermodynamic design principles

M Nguyen, Y Qiu… - Annual Review of …, 2021 - annualreviews.org
Studies of biological systems and materials, together with recent experimental and
theoretical advances in colloidal and nanoscale materials, have shown how nonequilibrium …

Ecosystem growth and development

BD Fath, SE Jørgensen, BC Patten, M Straškraba - Biosystems, 2004 - Elsevier
One of the most important features of biosystems is how they are able to maintain local order
(low entropy) within their system boundaries. At the ecosystem scale, this organization can …

[HTML][HTML] On the thermodynamics of self-organization in dissipative systems: Reflections on the unification of physics and biology

BJ Chung, B De Bari, J Dixon, D Kondepudi, J Pateras… - Fluids, 2022 - mdpi.com
In this paper, we discuss some well-known experimental observations on self-organization
in dissipative systems. The examples range from pure fluid flow, pattern selection in fluid …

Broken detailed balance at mesoscopic scales in active biological systems

C Battle, CP Broedersz, N Fakhri, VF Geyer, J Howard… - Science, 2016 - science.org
Systems in thermodynamic equilibrium are not only characterized by time-independent
macroscopic properties, but also satisfy the principle of detailed balance in the transitions …

Scale-invariant correlations in dynamic bacterial clusters

X Chen, X Dong, A Be'er, HL Swinney, HP Zhang - Physical review letters, 2012 - APS
In Bacillus subtilis colonies, motile bacteria move collectively, spontaneously forming
dynamic clusters. These bacterial clusters share similarities with other systems exhibiting …

Cooperative self-organization of microorganisms

E Ben-Jacob, I Cohen, H Levine - Advances in Physics, 2000 - Taylor & Francis
In nature, microorganisms must often cope with hostile environmental conditions. To do so
they have developed sophisticated cooperative behaviour and intricate communication …

Energetics of collective movement in vertebrates

Y Zhang, GV Lauder - Journal of Experimental Biology, 2023 - journals.biologists.com
The collective directional movement of animals occurs over both short distances and longer
migrations, and is a critical aspect of feeding, reproduction and the ecology of many species …

[HTML][HTML] Available energy fluxes drive a transition in the diversity, stability, and functional structure of microbial communities

R Marsland III, W Cui, J Goldford… - PLoS computational …, 2019 - journals.plos.org
A fundamental goal of microbial ecology is to understand what determines the diversity,
stability, and structure of microbial ecosystems. The microbial context poses special …

The constructal law of organization in nature: tree-shaped flows and body size

A Bejan - Journal of Experimental Biology, 2005 - journals.biologists.com
The constructal law is the statement that for a flow system to persist in time it must evolve in
such a way that it provides easier access to its currents. This is the law of configuration …