Molecular simulation has become an integral part of the DNA/RNA nanotechnology
research pipeline. In particular, understanding the dynamics of structures and single …

OxDNA and oxRNA are popular coarse-grained models used by the DNA/RNA
nanotechnology community to prototype, analyze and rationalize designed DNA and RNA …

This work seeks to remedy two deficiencies in the current nucleic acid nanotechnology
software environment: the lack of both a fast and user-friendly visualization tool and a …

DNA nanotechnology is a rapidly advancing field, which increasingly attracts interest in
many different disciplines, such as medicine, biotechnology, physics and biocomputing. The …

Although the field of structural DNA nanotechnology has been advancing with an
astonishing pace, de novo design of complex 3D nanostructures and functional devices …

Simulations of nucleic acids at different levels of structural details are increasingly used to
complement and interpret experiments in different fields, from biophysics to medicine and …

In moving towards the simulation of larger nucleic acid assemblies over longer timescales
that include more accurate representations of the environment, we are nearing the end of an …

DNA nanotechnology enables the programmed synthesis of intricate nanometer-scale
structures for diverse applications in materials and biological science. Precise control over …

INTRODUCTION Synthetic DNA can be programmed by using canonical Watson-Crick base
pairing to form highly structured nanometer-scale assemblies that rival many natural protein …

To simulate long time and length scale processes involving DNA it is necessary to use a
coarse-grained description. Here we provide an overview of different approaches to such …