Multi‐omics analyses reveal epigenomics basis for cotton somatic embryogenesis through successive regeneration acclimation process

J Li, M Wang, Y Li, Q Zhang, K Lindsey… - Plant biotechnology …, 2019 - Wiley Online Library
Plant regeneration via somatic embryogenesis is time‐consuming and highly genotype‐
dependent. The plant somatic embryogenesis process provokes many epigenetics changes …

[HTML][HTML] Dynamic roles for small RNAs and DNA methylation during ovule and fiber development in allotetraploid cotton

Q Song, X Guan, ZJ Chen - PLoS genetics, 2015 - journals.plos.org
DNA methylation is essential for plant and animal development. In plants, methylation
occurs at CG, CHG, and CHH (H= A, C or T) sites via distinct pathways. Cotton is an …

Multi-omics maps of cotton fibre reveal epigenetic basis for staged single-cell differentiation

M Wang, P Wang, L Tu, S Zhu, L Zhang… - Nucleic Acids …, 2016 - academic.oup.com
Epigenetic modifications are highlighted for their great importance in regulating plant
development, but their function associated with single-cell differentiation remains …

[HTML][HTML] Metabolome and transcriptome association analysis reveals dynamic regulation of purine metabolism and flavonoid synthesis in transdifferentiation during …

H Guo, H Guo, L Zhang, Z Tang, X Yu, J Wu… - International Journal of …, 2019 - mdpi.com
Plant regeneration via somatic embryogenesis (SE) is a key step during genetic
engineering. In the current study, integrated widely targeted metabolomics and RNA …

Global analysis reveals the crucial roles of DNA methylation during rice seed development

MQ Xing, YJ Zhang, SR Zhou, WY Hu, XT Wu… - Plant …, 2015 - academic.oup.com
Seed development is an important process of reproductive development and consists of
embryo and endosperm development; both comprise several key processes. To determine …

[HTML][HTML] Genetic and DNA Methylation Changes in Cotton (Gossypium) Genotypes and Tissues

K Osabe, JD Clement, F Bedon, FA Pettolino… - PLoS one, 2014 - journals.plos.org
In plants, epigenetic regulation is important in normal development and in modulating some
agronomic traits. The potential contribution of DNA methylation mediated gene regulation to …

[HTML][HTML] Single-cell resolution analysis reveals the preparation for reprogramming the fate of stem cell niche in cotton lateral meristem

X Zhu, Z Xu, G Wang, Y Cong, L Yu, R Jia, Y Qin… - Genome Biology, 2023 - Springer
Background Somatic embryogenesis is a major process for plant regeneration. However,
cell communication and the gene regulatory network responsible for cell reprogramming …

Single-base resolution methylome of cotton cytoplasmic male sterility system reveals epigenomic changes in response to high-temperature stress during anther …

M Zhang, X Zhang, L Guo, T Qi, G Liu… - Journal of …, 2020 - academic.oup.com
Single-base resolution methylome of cotton cytoplasmic male sterility system reveals
epigenomic changes in response to high-temperature stress during anther development …

[HTML][HTML] DNA methylation reprogramming during seed development and its functional relevance in seed size/weight determination in chickpea

MS Rajkumar, K Gupta, NK Khemka, R Garg… - Communications …, 2020 - nature.com
Seed development is orchestrated via complex gene regulatory networks and pathways.
Epigenetic factors may also govern seed development and seed size/weight. Here, we …

T ranscriptome Profiling Reveals Auxin and Cytokinin Regulating Somatic Embryogenesis in Different Sister Lines of Cotton Cultivar CCRI24

Z Xu, C Zhang, X Zhang, C Liu, Z Wu… - Journal of integrative …, 2013 - Wiley Online Library
To get a broader view on the molecular mechanisms underlying somatic embryogenesis
(SE) in cotton (Gossypium hirsutum L.), global analysis of cotton transcriptome dynamics …