Obtaining knowledge in pathology reports through a natural language processing approach with classification, named-entity recognition, and relation-extraction …
PURPOSE Robust institutional tumor banks depend on continuous sample curation or else
subsequent biopsy or resection specimens are overlooked after initial enrollment. Curation …
subsequent biopsy or resection specimens are overlooked after initial enrollment. Curation …
Automated extraction of tumor staging and diagnosis information from surgical pathology reports
S Abedian, ET Sholle, PM Adekkanattu… - JCO clinical cancer …, 2021 - ascopubs.org
PURPOSE Typically stored as unstructured notes, surgical pathology reports contain data
elements valuable to cancer research that require labor-intensive manual extraction …
elements valuable to cancer research that require labor-intensive manual extraction …
[HTML][HTML] Improving Information Extraction from Pathology Reports Using Named Entity Recognition
Pathology reports are considered the gold standard in medical research due to their
comprehensive and accurate diagnostic information. Natural language processing (NLP) …
comprehensive and accurate diagnostic information. Natural language processing (NLP) …
Automatic extraction of cancer registry reportable information from free-text pathology reports using multitask convolutional neural networks
Objective We implement 2 different multitask learning (MTL) techniques, hard parameter
sharing and cross-stitch, to train a word-level convolutional neural network (CNN) …
sharing and cross-stitch, to train a word-level convolutional neural network (CNN) …
Efficient identification of nationally mandated reportable cancer cases using natural language processing and machine learning
JD Osborne, M Wyatt, AO Westfall… - Journal of the …, 2016 - academic.oup.com
Objective To help cancer registrars efficiently and accurately identify reportable cancer
cases. Material and Methods The Cancer Registry Control Panel (CRCP) was developed to …
cases. Material and Methods The Cancer Registry Control Panel (CRCP) was developed to …
[HTML][HTML] Development and validation of an automated basal cell carcinoma histopathology information extraction system using natural language processing
SR Ali, H Strafford, TD Dobbs… - Frontiers in …, 2022 - frontiersin.org
Introduction Routinely collected healthcare data are a powerful research resource, but often
lack detailed disease-specific information that is collected in clinical free text such as …
lack detailed disease-specific information that is collected in clinical free text such as …
Hierarchical attention networks for information extraction from cancer pathology reports
Objective: We explored how a deep learning (DL) approach based on hierarchical attention
networks (HANs) can improve model performance for multiple information extraction tasks …
networks (HANs) can improve model performance for multiple information extraction tasks …
Natural language inference for curation of structured clinical registries from unstructured text
B Percha, K Pisapati, C Gao… - Journal of the American …, 2022 - academic.oup.com
Objective Clinical registries—structured databases of demographic, diagnosis, and
treatment information—play vital roles in retrospective studies, operational planning, and …
treatment information—play vital roles in retrospective studies, operational planning, and …
Do neural information extraction algorithms generalize across institutions?
PURPOSE Natural language processing (NLP) techniques have been adopted to reduce
the curation costs of electronic health records. However, studies have questioned whether …
the curation costs of electronic health records. However, studies have questioned whether …
[HTML][HTML] Artificial intelligence-driven structurization of diagnostic information in free-text pathology reports
PS Giannaris, Z Al-Taie, M Kovalenko… - Journal of Pathology …, 2020 - Elsevier
Background: Free-text sections of pathology reports contain the most important information
from a diagnostic standpoint. However, this information is largely underutilized for computer …
from a diagnostic standpoint. However, this information is largely underutilized for computer …