Obtaining knowledge in pathology reports through a natural language processing approach with classification, named-entity recognition, and relation-extraction …

T Oliwa, SB Maron, LM Chase, S Lomnicki… - JCO clinical cancer …, 2019 - ascopubs.org
PURPOSE Robust institutional tumor banks depend on continuous sample curation or else
subsequent biopsy or resection specimens are overlooked after initial enrollment. Curation …

Automated extraction of tumor staging and diagnosis information from surgical pathology reports

S Abedian, ET Sholle, PM Adekkanattu… - JCO clinical cancer …, 2021 - ascopubs.org
PURPOSE Typically stored as unstructured notes, surgical pathology reports contain data
elements valuable to cancer research that require labor-intensive manual extraction …

[HTML][HTML] Improving Information Extraction from Pathology Reports Using Named Entity Recognition

KG Zeng, T Dutt, J Witowski, GVK Kiran, F Yeung… - Research …, 2023 - ncbi.nlm.nih.gov
Pathology reports are considered the gold standard in medical research due to their
comprehensive and accurate diagnostic information. Natural language processing (NLP) …

Automatic extraction of cancer registry reportable information from free-text pathology reports using multitask convolutional neural networks

M Alawad, S Gao, JX Qiu, HJ Yoon… - Journal of the …, 2020 - academic.oup.com
Objective We implement 2 different multitask learning (MTL) techniques, hard parameter
sharing and cross-stitch, to train a word-level convolutional neural network (CNN) …

Efficient identification of nationally mandated reportable cancer cases using natural language processing and machine learning

JD Osborne, M Wyatt, AO Westfall… - Journal of the …, 2016 - academic.oup.com
Objective To help cancer registrars efficiently and accurately identify reportable cancer
cases. Material and Methods The Cancer Registry Control Panel (CRCP) was developed to …

[HTML][HTML] Development and validation of an automated basal cell carcinoma histopathology information extraction system using natural language processing

SR Ali, H Strafford, TD Dobbs… - Frontiers in …, 2022 - frontiersin.org
Introduction Routinely collected healthcare data are a powerful research resource, but often
lack detailed disease-specific information that is collected in clinical free text such as …

Hierarchical attention networks for information extraction from cancer pathology reports

S Gao, MT Young, JX Qiu, HJ Yoon… - Journal of the …, 2018 - academic.oup.com
Objective: We explored how a deep learning (DL) approach based on hierarchical attention
networks (HANs) can improve model performance for multiple information extraction tasks …

Natural language inference for curation of structured clinical registries from unstructured text

B Percha, K Pisapati, C Gao… - Journal of the American …, 2022 - academic.oup.com
Objective Clinical registries—structured databases of demographic, diagnosis, and
treatment information—play vital roles in retrospective studies, operational planning, and …

Do neural information extraction algorithms generalize across institutions?

E Santus, C Li, A Yala, D Peck, R Soomro… - JCO clinical cancer …, 2019 - ascopubs.org
PURPOSE Natural language processing (NLP) techniques have been adopted to reduce
the curation costs of electronic health records. However, studies have questioned whether …

[HTML][HTML] Artificial intelligence-driven structurization of diagnostic information in free-text pathology reports

PS Giannaris, Z Al-Taie, M Kovalenko… - Journal of Pathology …, 2020 - Elsevier
Background: Free-text sections of pathology reports contain the most important information
from a diagnostic standpoint. However, this information is largely underutilized for computer …