Deep decoding of codon usage strategies and host adaption preferences of soybean mosaic virus

L Jiang, Q Zhang, S Xiao, F Si - International Journal of Biological …, 2022 - Elsevier
Soybean mosaic virus (SMV) has threatened the global yield of Leguminosae crops, but the
mechanism of its infection, spread, and evolution remains unknown. A systemic analysis of …

Genetic changes and host adaptability in sugarcane mosaic virus based on complete genome sequences

Z He, Z Dong, H Gan - Molecular phylogenetics and evolution, 2020 - Elsevier
Sugarcane mosaic virus (SCMV), a member of the genus Potyvirus in the family Potyviridae,
is an important pathogen that causes mosaic diseases in maize, sugarcane, canna and …

Host plants shape the codon usage pattern of turnip mosaic virus

L Qin, S Ding, Z Wang, R Jiang, Z He - Viruses, 2022 - mdpi.com
Turnip mosaic virus (TuMV), an important pathogen that causes mosaic diseases in
vegetable crops worldwide, belongs to the genus Potyvirus of the family Potyviridae …

Base composition and translational selection are insufficient to explain codon usage bias in plant viruses

DJ Cardinale, K DeRosa, S Duffy - Viruses, 2013 - mdpi.com
Viral codon usage bias may be the product of a number of synergistic or antagonistic factors,
including genomic nucleotide composition, translational selection, genomic architecture …

The evolution of soybean mosaic virus: an updated analysis by obtaining 18 new genomic sequences of Chinese strains/isolates

GC Zhou, ZQ Shao, FF Ma, P Wu, XY Wu, ZY Xie… - Virus research, 2015 - Elsevier
Soybean mosaic virus (SMV) is widely recognized as a highly damaging pathogen of
soybean, and various strains/isolates have been reported to date. However, the pathogenic …

Synonymous codon pattern of cowpea mild mottle virus sheds light on its host adaptation and genome evolution

S Yang, Y Liu, X Wu, X Cheng, X Wu - Pathogens, 2022 - mdpi.com
Cowpea mild mottle virus (CpMMV) is an economically significant virus that causes severe
disease on several legume crops. Aside from recombination, other factors driving its rapid …

[HTML][HTML] De novo genome assembly and single nucleotide variations for soybean mosaic virus using soybean seed transcriptome data

Y Jo, H Choi, M Bae, SM Kim, SL Kim… - The Plant Pathology …, 2017 - ncbi.nlm.nih.gov
Soybean is the most important legume crop in the world. Several diseases in soybean lead
to serious yield losses in major soybean-producing countries. Moreover, soybean can be …

Codon usage provides insights into the adaptive evolution of mycoviruses in their associated fungi host

Q Wang, X Lyu, J Cheng, Y Fu, Y Lin… - International Journal of …, 2022 - mdpi.com
Codon usage bias (CUB) could reflect co-evolutionary changes between viruses and hosts
in contrast to plant and animal viruses, and the systematic analysis of codon usage among …

[PDF][PDF] Transcription, mRNA export, and immune evasion shape the codon usage of viruses

C Mordstein, L Cano, AC Morales… - Genome Biology and …, 2021 - academic.oup.com
The nucleotide composition, dinucleotide composition, and codon usage of many viruses
differ from their hosts. These differences arise because viruses are subject to unique …

Analysis of synonymous codon usage in Zea mays

H Liu, R He, H Zhang, Y Huang, M Tian… - Molecular Biology …, 2010 - Springer
It is important and meaningful to understand the codon usage pattern and the factors that
shape codon usage of maize. In this study, trends in synonymous codon usage in maize …