Cooperative relaxation of supercoils and periodic transcriptional initiation within polymerase batteries
P Guptasarma - BioEssays, 1996 - Wiley Online Library
Transcription and DNA supercoiling are known to be linked by a cause‐effect relationship
that operates in both directions. It is proposed here that this two‐way relationship may be …
that operates in both directions. It is proposed here that this two‐way relationship may be …
Effects of DNA supercoiling on gene expression
ECC Lin, AS Lynch, JC Wang, AS Lynch - Regulation of gene expression …, 1996 - Springer
It is well known that open complex formation between promoters and RNA polymerase is
thermodynamically favored by negative su-percoiling of the DNA template. The effects of …
thermodynamically favored by negative su-percoiling of the DNA template. The effects of …
Transcription-driven supercoiling of DNA: direct biochemical evidence from in vitro studies
YP Tsao, HY Wu, LF Liu - Cell, 1989 - cell.com
The translocation of an RNA polymerase elongation complex along double helical DNA has
been proposed to generate positive supercoiling waves ahead of and negative supercoiling …
been proposed to generate positive supercoiling waves ahead of and negative supercoiling …
Mechanism of initiation of transcription by Escherichia coli RNA polymerase on supercoiled template
RK Mishra, D Chatterji - Molecular microbiology, 1993 - Wiley Online Library
DNA supercoiling is known to influence the pattern of gene expression in prokaryotes. Thus
the mechanism of transcription initiation and the topological state of the template are …
the mechanism of transcription initiation and the topological state of the template are …
Potent stimulation of transcription-coupled DNA supercoiling by sequence-specific DNA-binding proteins
F Leng, R McMacken - … of the National Academy of Sciences, 2002 - National Acad Sciences
Transcription by RNA polymerase can stimulate localized DNA supercoiling in Escherichia
coli. In vivo, there is extensive experimental support for a “twin-domain” model in which …
coli. In vivo, there is extensive experimental support for a “twin-domain” model in which …
Supercoiling of the DNA template during transcription.
LF Liu, JC Wang - Proceedings of the National Academy of …, 1987 - National Acad Sciences
Transcription of a right-handed double-helical DNA requires a relative rotation of the RNA
polymerase and its nascent RNA around the DNA. We describe conditions under which the …
polymerase and its nascent RNA around the DNA. We describe conditions under which the …
Transient and dynamic DNA supercoiling potently stimulates the leu-500 promoter in Escherichia coli
X Zhi, S Dages, K Dages, Y Liu, ZC Hua… - Journal of Biological …, 2017 - ASBMB
The inactive prokaryotic leu-500 promoter (P leu-500) contains a single A-to-G point
mutation in the− 10 region of the leucine operon promoter, which causes leucine …
mutation in the− 10 region of the leucine operon promoter, which causes leucine …
Localized domains of DNA supercoiling: topological coupling between promoters
FJM Mojica, CF Higgins - Molecular microbiology, 1996 - Wiley Online Library
According to the twin‐supercoiled domain model, a local domain with a high level of DNA
supercoiling can be generated between two divergently transcribed promoters. We have …
supercoiling can be generated between two divergently transcribed promoters. We have …
Large-scale effects of transcriptional DNA supercoiling in vivo
AS Krasilnikov, A Podtelezhnikov, A Vologodskii… - Journal of molecular …, 1999 - Elsevier
The scale of negative DNA supercoiling generated by transcription in Top+ Escherichia coli
cells was assessed from the efficiency of cruciform formation upstream of a regulated …
cells was assessed from the efficiency of cruciform formation upstream of a regulated …
Structural and dynamic basis of a supercoiling-responsive DNA element
SH Bae, SH Yun, D Sun, HM Lim… - Nucleic acids …, 2006 - academic.oup.com
In both eukaryotes and prokaryotes, negative supercoiling of chromosomal DNA acts locally
to regulate a variety of cellular processes, such as transcription, replication, recombination …
to regulate a variety of cellular processes, such as transcription, replication, recombination …