Genome-wide analysis of somatic noncoding mutation patterns in cancer

F Dietlein, AB Wang, C Fagre, A Tang, NJM Besselink… - Science, 2022 - science.org
We established a genome-wide compendium of somatic mutation events in 3949 whole
cancer genomes representing 19 tumor types. Protein-coding events captured well …

Somatic mutation in cancer and normal cells

I Martincorena, PJ Campbell - Science, 2015 - science.org
Spontaneously occurring mutations accumulate in somatic cells throughout a person's
lifetime. The majority of these mutations do not have a noticeable effect, but some can alter …

RNA sequence analysis reveals macroscopic somatic clonal expansion across normal tissues

K Yizhak, F Aguet, J Kim, JM Hess, K Kübler, J Grimsby… - Science, 2019 - science.org
INTRODUCTION Cancer genome studies have contributed to the analysis and discovery of
somatic mutations that drive cancer growth. However, studying the genetic makeup of a …

Use of CRISPR-modified human stem cell organoids to study the origin of mutational signatures in cancer

J Drost, R Van Boxtel, F Blokzijl, T Mizutani, N Sasaki… - Science, 2017 - science.org
Mutational processes underlie cancer initiation and progression. Signatures of these
processes in cancer genomes may explain cancer etiology and could hold diagnostic and …

The repertoire of mutational signatures in human cancer

LB Alexandrov, J Kim, NJ Haradhvala, MN Huang… - Nature, 2020 - nature.com
Somatic mutations in cancer genomes are caused by multiple mutational processes, each of
which generates a characteristic mutational signature. Here, as part of the Pan-Cancer …

The consensus coding sequences of human breast and colorectal cancers

T Sjoblom, S Jones, LD Wood, DW Parsons, J Lin… - science, 2006 - science.org
The elucidation of the human genome sequence has made it possible to identify genetic
alterations in cancers in unprecedented detail. To begin a systematic analysis of such …

Cancer genome landscapes

B Vogelstein, N Papadopoulos, VE Velculescu, S Zhou… - science, 2013 - science.org
Over the past decade, comprehensive sequencing efforts have revealed the genomic
landscapes of common forms of human cancer. For most cancer types, this landscape …

High-resolution interrogation of functional elements in the noncoding genome

NE Sanjana, J Wright, K Zheng, O Shalem… - Science, 2016 - science.org
The noncoding genome affects gene regulation and disease, yet we lack tools for rapid
identification and manipulation of noncoding elements. We developed a CRISPR screen …

First pass at cancer genome reveals complex landscape

J Kaiser - 2006 - science.org
Scientists have long known that the sparks that kindle cancer are mutations in a cell's genes.
But most cancer-causing mutations have been discovered by looking in obvious places …

The genomic landscapes of human breast and colorectal cancers

LD Wood, DW Parsons, S Jones, J Lin, T Sjoblom… - Science, 2007 - science.org
Human cancer is caused by the accumulation of mutations in oncogenes and tumor
suppressor genes. To catalog the genetic changes that occur during tumorigenesis, we …