NLLSS: predicting synergistic drug combinations based on semi-supervised learning

X Chen, B Ren, M Chen, Q Wang… - PLoS computational …, 2016 - journals.plos.org
Fungal infection has become one of the leading causes of hospital-acquired infections with
high mortality rates. Furthermore, drug resistance is common for fungus-causing diseases …

Ensemble prediction of synergistic drug combinations incorporating biological, chemical, pharmacological, and network knowledge

P Ding, R Yin, J Luo, CK Kwoh - IEEE journal of biomedical and …, 2018 - ieeexplore.ieee.org
Combinatorial therapy may reduce drug side effects and improve drug efficacy, making
combination therapy a promising strategy to treat complex diseases. However, in the …

Prediction of synergistic anti-cancer drug combinations based on drug target network and drug induced gene expression profiles

X Li, Y Xu, H Cui, T Huang, D Wang, B Lian, W Li… - Artificial intelligence in …, 2017 - Elsevier
Objective Synergistic drug combinations are promising therapies for cancer treatment.
However, effective prediction of synergistic drug combinations is quite challenging as …

A review of machine learning approaches for drug synergy prediction in cancer

A Torkamannia, Y Omidi… - Briefings in Bioinformatics, 2022 - academic.oup.com
Combinational pharmacotherapy with the synergistic/additive effect is a powerful treatment
strategy for complex diseases such as malignancies. Identifying synergistic combinations …

Artificial intelligence and machine learning methods in predicting anti-cancer drug combination effects

K Fan, L Cheng, L Li - Briefings in bioinformatics, 2021 - academic.oup.com
Drug combinations have exhibited promising therapeutic effects in treating cancer patients
with less toxicity and adverse side effects. However, it is infeasible to experimentally screen …

Predicting drug-drug interactions based on integrated similarity and semi-supervised learning

C Yan, G Duan, Y Zhang, FX Wu… - … /ACM transactions on …, 2020 - ieeexplore.ieee.org
A drug-drug interaction (DDI) is defined as an association between two drugs where the
pharmacological effects of a drug are influenced by another drug. Positive DDIs can usually …

Neighborhood regularized logistic matrix factorization for drug-target interaction prediction

Y Liu, M Wu, C Miao, P Zhao, XL Li - PLoS computational biology, 2016 - journals.plos.org
In pharmaceutical sciences, a crucial step of the drug discovery process is the identification
of drug-target interactions. However, only a small portion of the drug-target interactions have …

SNRMPACDC: computational model focused on Siamese network and random matrix projection for anticancer synergistic drug combination prediction

TH Li, CC Wang, L Zhang, X Chen - Briefings in Bioinformatics, 2023 - academic.oup.com
Synergistic drug combinations can improve the therapeutic effect and reduce the drug
dosage to avoid toxicity. In previous years, an in vitro approach was utilized to screen …

Machine learning methods, databases and tools for drug combination prediction

L Wu, Y Wen, D Leng, Q Zhang, C Dai… - Briefings in …, 2022 - academic.oup.com
Combination therapy has shown an obvious efficacy on complex diseases and can greatly
reduce the development of drug resistance. However, even with high-throughput screens …

DeepSynergy: predicting anti-cancer drug synergy with Deep Learning

K Preuer, RPI Lewis, S Hochreiter, A Bender… - …, 2018 - academic.oup.com
Motivation While drug combination therapies are a well-established concept in cancer
treatment, identifying novel synergistic combinations is challenging due to the size of …