[HTML][HTML] Inferring strain-level mutational drivers of phage-bacteria interaction phenotypes

A Lucia-Sanz, S Peng, CYJ Leung, A Gupta, JR Meyer… - bioRxiv, 2024 - ncbi.nlm.nih.gov
The enormous diversity of bacteriophages and their bacterial hosts presents a significant
challenge to predict which phages infect a focal set of bacteria. Infection is largely …

Predicting phage-bacteria interactions at the strain level from genomes

B Gaborieau, H Vaysset, F Tesson, I Charachon, N Dib… - Biorxiv, 2023 - biorxiv.org
Predicting how phages can selectively infect specific bacterial strains holds promise for
developing novel approaches to combat bacterial infections and better understanding …

[HTML][HTML] Toothpicks, logic, and next-generation sequencing: systematic investigation of bacteriophage-host interactions

A Shaidullina, A Harms - Current Opinion in Microbiology, 2022 - Elsevier
Highlights•Phage-host interactions have mostly been studied one-by-one using few old
models.•Systematic approaches reveal new molecular mechanisms of phage-host …

[HTML][HTML] High-throughput mapping of the phage resistance landscape in E. coli

VK Mutalik, BA Adler, HS Rishi, D Piya, C Zhong… - PLoS …, 2020 - journals.plos.org
Bacteriophages (phages) are critical players in the dynamics and function of microbial
communities and drive processes as diverse as global biogeochemical cycles and human …

Systematic genome-wide discovery of host factors governing bacteriophage infectivity

C Chitboonthavisuk, C Martin, P Huss, JM Peters… - bioRxiv, 2024 - biorxiv.org
Bacterial host factors regulate the infection cycle of bacteriophages. Except for some well-
studied host factors (eg, receptors or restriction-modification systems), the contribution of the …

Understanding the structure and dynamics of bacteria-phage infection networks

RCT Wright - 2018 - etheses.whiterose.ac.uk
As rising levels of antibiotic resistance limit treatment options against bacterial infections,
phage therapy offers a promising alternative. However, as bacteria and phage have co …

Computational approaches to predict bacteriophage–host relationships

RA Edwards, K McNair, K Faust, J Raes… - FEMS microbiology …, 2016 - academic.oup.com
Metagenomics has changed the face of virus discovery by enabling the accurate
identification of viral genome sequences without requiring isolation of the viruses. As a …

[HTML][HTML] Prediction of Klebsiella phage-host specificity at the strain level

D Boeckaerts, M Stock, C Ferriol-González… - Nature …, 2024 - nature.com
Phages are increasingly considered promising alternatives to target drug-resistant bacterial
pathogens. However, their often-narrow host range can make it challenging to find matching …

Actionable prediction of Klebsiella phage-host specificity at the subspecies level

Y Briers, D Boeckaerts, M Stock, C Ferriol-González… - 2023 - researchsquare.com
Phages are increasingly considered as promising alternatives to target drug-resistant
bacterial pathogens. However, their often-narrow host range can make it challenging to find …

PB-LKS: a python package for predicting phage–bacteria interaction through local K-mer strategy

J Qiu, W Nie, H Ding, J Dai, Y Wei, D Li… - Briefings in …, 2024 - academic.oup.com
Bacteriophages can help the treatment of bacterial infections yet require in-silico models to
deal with the great genetic diversity between phages and bacteria. Despite the tolerable …