[HTML][HTML] Inferring strain-level mutational drivers of phage-bacteria interaction phenotypes
The enormous diversity of bacteriophages and their bacterial hosts presents a significant
challenge to predict which phages infect a focal set of bacteria. Infection is largely …
challenge to predict which phages infect a focal set of bacteria. Infection is largely …
Predicting phage-bacteria interactions at the strain level from genomes
Predicting how phages can selectively infect specific bacterial strains holds promise for
developing novel approaches to combat bacterial infections and better understanding …
developing novel approaches to combat bacterial infections and better understanding …
[HTML][HTML] Toothpicks, logic, and next-generation sequencing: systematic investigation of bacteriophage-host interactions
A Shaidullina, A Harms - Current Opinion in Microbiology, 2022 - Elsevier
Highlights•Phage-host interactions have mostly been studied one-by-one using few old
models.•Systematic approaches reveal new molecular mechanisms of phage-host …
models.•Systematic approaches reveal new molecular mechanisms of phage-host …
[HTML][HTML] High-throughput mapping of the phage resistance landscape in E. coli
Bacteriophages (phages) are critical players in the dynamics and function of microbial
communities and drive processes as diverse as global biogeochemical cycles and human …
communities and drive processes as diverse as global biogeochemical cycles and human …
Systematic genome-wide discovery of host factors governing bacteriophage infectivity
Bacterial host factors regulate the infection cycle of bacteriophages. Except for some well-
studied host factors (eg, receptors or restriction-modification systems), the contribution of the …
studied host factors (eg, receptors or restriction-modification systems), the contribution of the …
Understanding the structure and dynamics of bacteria-phage infection networks
RCT Wright - 2018 - etheses.whiterose.ac.uk
As rising levels of antibiotic resistance limit treatment options against bacterial infections,
phage therapy offers a promising alternative. However, as bacteria and phage have co …
phage therapy offers a promising alternative. However, as bacteria and phage have co …
Computational approaches to predict bacteriophage–host relationships
Metagenomics has changed the face of virus discovery by enabling the accurate
identification of viral genome sequences without requiring isolation of the viruses. As a …
identification of viral genome sequences without requiring isolation of the viruses. As a …
[HTML][HTML] Prediction of Klebsiella phage-host specificity at the strain level
Phages are increasingly considered promising alternatives to target drug-resistant bacterial
pathogens. However, their often-narrow host range can make it challenging to find matching …
pathogens. However, their often-narrow host range can make it challenging to find matching …
Actionable prediction of Klebsiella phage-host specificity at the subspecies level
Phages are increasingly considered as promising alternatives to target drug-resistant
bacterial pathogens. However, their often-narrow host range can make it challenging to find …
bacterial pathogens. However, their often-narrow host range can make it challenging to find …
PB-LKS: a python package for predicting phage–bacteria interaction through local K-mer strategy
J Qiu, W Nie, H Ding, J Dai, Y Wei, D Li… - Briefings in …, 2024 - academic.oup.com
Bacteriophages can help the treatment of bacterial infections yet require in-silico models to
deal with the great genetic diversity between phages and bacteria. Despite the tolerable …
deal with the great genetic diversity between phages and bacteria. Despite the tolerable …