Integrated profiling of human pancreatic cancer organoids reveals chromatin accessibility features associated with drug sensitivity

X Shi, Y Li, Q Yuan, S Tang, S Guo, Y Zhang… - Nature …, 2022 - nature.com
Chromatin accessibility plays an essential role in controlling cellular identity and the
therapeutic response of human cancers. However, the chromatin accessibility landscape …

Pancreatic cancer prognosis is predicted by an ATAC-array technology for assessing chromatin accessibility

S Dhara, S Chhangawala, H Chintalapudi… - Nature …, 2021 - nature.com
Unlike other malignancies, therapeutic options in pancreatic ductal adenocarcinoma
(PDAC) are largely limited to cytotoxic chemotherapy without the benefit of molecular …

Organoid profiling identifies common responders to chemotherapy in pancreatic cancer

H Tiriac, P Belleau, DD Engle, D Plenker, A Deschênes… - Cancer discovery, 2018 - AACR
Pancreatic cancer is the most lethal common solid malignancy. Systemic therapies are often
ineffective, and predictive biomarkers to guide treatment are urgently needed. We generated …

The chromatin accessibility landscape of primary human cancers

MR Corces, JM Granja, S Shams, BH Louie… - Science, 2018 - science.org
INTRODUCTION Cancer is one of the leading causes of death worldwide. Although the 2%
of the human genome that encodes proteins has been extensively studied, much remains to …

[HTML][HTML] Pre-existing functional heterogeneity of tumorigenic compartment as the origin of chemoresistance in pancreatic tumors

S Seth, CY Li, IL Ho, D Corti, S Loponte, L Sapio… - Cell reports, 2019 - cell.com
Adaptive drug-resistance mechanisms allow human tumors to evade treatment through
selection and expansion of treatment-resistant clones. Here, studying clonal evolution of …

Integrative pan cancer analysis reveals epigenomic variation in cancer type and cell specific chromatin domains

LK Gopi, BL Kidder - Nature communications, 2021 - nature.com
Epigenetic mechanisms contribute to the initiation and development of cancer, and
epigenetic variation promotes dynamic gene expression patterns that facilitate tumor …

Drug screening and genome editing in human pancreatic cancer organoids identifies drug-gene interactions and candidates for off-label therapy

CK Hirt, TH Booij, L Grob, P Simmler, NC Toussaint… - Cell genomics, 2022 - cell.com
Pancreatic cancer (PDAC) is a highly aggressive malignancy for which the identification of
novel therapies is urgently needed. Here, we establish a human PDAC organoid biobank …

A landscape of pharmacogenomic interactions in cancer

F Iorio, TA Knijnenburg, DJ Vis, GR Bignell… - Cell, 2016 - cell.com
Systematic studies of cancer genomes have provided unprecedented insights into the
molecular nature of cancer. Using this information to guide the development and application …

Epigenetic regulation during cancer transitions across 11 tumour types

NV Terekhanova, A Karpova, WW Liang… - Nature, 2023 - nature.com
Chromatin accessibility is essential in regulating gene expression and cellular identity, and
alterations in accessibility have been implicated in driving cancer initiation, progression and …

High-resolution Hi-C maps highlight multiscale 3D epigenome reprogramming during pancreatic cancer metastasis

B Ren, J Yang, C Wang, G Yang, H Wang… - Journal of Hematology & …, 2021 - Springer
Background Pancreatic cancer's poor prognosis is caused by distal metastasis, which is
associated with epigenetic changes. However, the role of the 3D epigenome in pancreatic …