Identifying Reproducible Transcription Regulator Coexpression Patterns with Single Cell Transcriptomics
A Morin, C Chu, P Pavlidis - bioRxiv, 2024 - biorxiv.org
The proliferation of single cell transcriptomics has potentiated our ability to unveil patterns
that reflect dynamic cellular processes, rather than cell type compositional effects that …
that reflect dynamic cellular processes, rather than cell type compositional effects that …
Coexpression uncovers a unified single-cell transcriptomic landscape
Researchers stand to gain insight into complex biological systems by assembling multiple
single-cell RNA-sequencing (scRNA-seq) studies to reveal a panoramic view of overarching …
single-cell RNA-sequencing (scRNA-seq) studies to reveal a panoramic view of overarching …
Evaluating measures of association for single-cell transcriptomics
Single-cell transcriptomics provides an opportunity to characterize cell-type-specific
transcriptional networks, intercellular signaling pathways and cellular diversity with …
transcriptional networks, intercellular signaling pathways and cellular diversity with …
[HTML][HTML] Single-cell transcriptomics unveils gene regulatory network plasticity
Background Single-cell RNA sequencing (scRNA-seq) plays a pivotal role in our
understanding of cellular heterogeneity. Current analytical workflows are driven by …
understanding of cellular heterogeneity. Current analytical workflows are driven by …
RoCK and ROI: Single-cell transcriptomics with multiplexed enrichment of selected transcripts and region-specific sequencing
G Moro, I Mallona, J Maillard, MD Brügger, H Fazilaty… - bioRxiv, 2024 - biorxiv.org
Various tools have been developed to reliably identify, trace and analyze single cells in
complex tissues. In recent years, these technologies have been combined with …
complex tissues. In recent years, these technologies have been combined with …
Quantification of transcript isoforms at the single-cell level using SCALPEL
F Ake, SM Fernandez-Moya, M Schilling… - bioRxiv, 2024 - biorxiv.org
Single-cell RNA sequencing (scRNA-seq) has facilitated the study of gene expression and
the development of new tools to quantify transcript in individual cells. Yet, most of these …
the development of new tools to quantify transcript in individual cells. Yet, most of these …
Addressing the looming identity crisis in single cell RNA-seq
Single cell RNA-sequencing technology (scRNA-seq) provides a new avenue to discover
and characterize cell types, but the experiment-specific technical biases and analytic …
and characterize cell types, but the experiment-specific technical biases and analytic …
ClusterMap: comparing analyses across multiple single cell RNA-seq profiles
X Gao, D Hu, M Gogol, H Li - bioRxiv, 2018 - biorxiv.org
Single cell RNA-Seq facilitates the characterization of cell type heterogeneity and
developmental processes. Further study of single cell profiles across different conditions …
developmental processes. Further study of single cell profiles across different conditions …
[HTML][HTML] Shared regulation and functional relevance of local gene co-expression revealed by single cell analysis
D M. Ribeiro, C Ziyani, O Delaneau - Communications biology, 2022 - nature.com
Most human genes are co-expressed with a nearby gene. Previous studies have revealed
this local gene co-expression to be widespread across chromosomes and across dozens of …
this local gene co-expression to be widespread across chromosomes and across dozens of …
Single-cell transcriptional diversity is a hallmark of developmental potential
GS Gulati, SS Sikandar, DJ Wesche, A Manjunath… - Science, 2020 - science.org
Single-cell RNA sequencing (scRNA-seq) is a powerful approach for reconstructing cellular
differentiation trajectories. However, inferring both the state and direction of differentiation is …
differentiation trajectories. However, inferring both the state and direction of differentiation is …