Data-driven modelling of biological multi-scale processes

J Hasenauer, N Jagiella, S Hross… - Journal of Coupled …, 2015 - ingentaconnect.com
Biological processes involve a variety of spatial and temporal scales. A holistic
understanding of many biological processes therefore requires multi-scale models which …

[HTML][HTML] Parallelization and high-performance computing enables automated statistical inference of multi-scale models

N Jagiella, D Rickert, FJ Theis, J Hasenauer - Cell systems, 2017 - cell.com
Mechanistic understanding of multi-scale biological processes, such as cell proliferation in a
changing biological tissue, is readily facilitated by computational models. While tools exist to …

Tuneable resolution as a systems biology approach for multi‐scale, multi‐compartment computational models

DE Kirschner, CA Hunt, S Marino… - … Systems Biology and …, 2014 - Wiley Online Library
The use of multi‐scale mathematical and computational models to study complex biological
processes is becoming increasingly productive. Multi‐scale models span a range of spatial …

Multiscale computational models of complex biological systems

J Walpole, JA Papin, SM Peirce - Annual review of biomedical …, 2013 - annualreviews.org
Integration of data across spatial, temporal, and functional scales is a primary focus of
biomedical engineering efforts. The advent of powerful computing platforms, coupled with …

Multi-scale modelling and simulation in systems biology

JO Dada, P Mendes - Integrative Biology, 2011 - academic.oup.com
The aim of systems biology is to describe and understand biology at a global scale where
biological functions are recognised as a result of complex mechanisms that happen at …

Multi-scale modeling in biology: how to bridge the gaps between scales?

Z Qu, A Garfinkel, JN Weiss, M Nivala - Progress in biophysics and …, 2011 - Elsevier
Human physiological functions are regulated across many orders of magnitude in space and
time. Integrating the information and dynamics from one scale to another is critical for the …

Multiscale modeling for biologists

M Meier‐Schellersheim, IDC Fraser… - … : Systems Biology and …, 2009 - Wiley Online Library
Biomedical research frequently involves performing experiments and developing
hypotheses that link different scales of biological systems such as, for instance, the scales of …

Multiscale modeling meets machine learning: What can we learn?

GCY Peng, M Alber, A Buganza Tepole… - … Methods in Engineering, 2021 - Springer
Abstract Machine learning is increasingly recognized as a promising technology in the
biological, biomedical, and behavioral sciences. There can be no argument that this …

FitMultiCell: simulating and parameterizing computational models of multi-scale and multi-cellular processes

E Alamoudi, Y Schälte, R Müller, J Starruß… - …, 2023 - academic.oup.com
Motivation Biological tissues are dynamic and highly organized. Multi-scale models are
helpful tools to analyse and understand the processes determining tissue dynamics. These …

[HTML][HTML] Multiscale modeling in disease

ANF Versypt - Current opinion in systems biology, 2021 - Elsevier
Multiscale computational modeling aims to connect the complex networks of effects at
different length and/or time scales. For example, these networks often include intracellular …