Motivation: Bayesian analysis through programs like BEAST (Drummond and Rumbaut,)
and MrBayes (Huelsenbeck et al.,) provides a powerful method for reconstruction of …

A Tree Viewer (ATV) is a Java tool for the display and manipulation of annotated
phylogenetic trees. It can be utilized both as a standalone application and as an applet in a …

Background Bayesian phylogenetic analysis generates a set of trees which are often
condensed into a single tree representing the whole set. Many methods exist for selecting a …

Phyutility provides a set of phyloinformatics tools for summarizing and manipulating
phylogenetic trees, manipulating molecular data and retrieving data from NCBI. Its simple …

Motivation: The computation of large phylogenetic trees with statistical models such as
maximum likelihood or bayesian inference is computationally extremely intensive. It has …

PhyloWidget is a web-based tool for the visualization and manipulation of phylogenetic tree
data. It can be accessed online or downloaded as a standalone application. A simple URL …

BEST implements a Bayesian hierarchical model to jointly estimate gene trees and the
species tree from multilocus sequences. It provides a new option for estimating species …

IcyTree is an easy-to-use application which can be used to visualize a wide variety of
phylogenetic trees and networks. While numerous phylogenetic tree viewers exist already …

Interactive Tree Of Life (iTOL) is a web-based tool for the display, manipulation and
annotation of phylogenetic trees. Trees can be interactively pruned and re-rooted. Various …

The program MRBAYES performs Bayesian inference of phylogeny using a variant of
Markov chain Monte Carlo. Availability: MRBAYES, including the source code …