Global identification of human transcribed sequences with genome tiling arrays

P Bertone, V Stolc, TE Royce, JS Rozowsky, AE Urban… - Science, 2004 - science.org
Elucidating the transcribed regions of the genome constitutes a fundamental aspect of
human biology, yet this remains an outstanding problem. To comprehensively identify …

Examples of the complex architecture of the human transcriptome revealed by RACE and high-density tiling arrays

P Kapranov, J Drenkow, J Cheng, J Long… - Genome …, 2005 - genome.cshlp.org
Recently, we mapped the sites of transcription across∼ 30% of the human genome and
elucidated the structures of several hundred novel transcripts. In this report, we describe a …

Genomics: The amazing complexity of the human transcriptome.

MC Frith, M Pheasant… - European Journal of …, 2005 - search.ebscohost.com
Explores several studies on the complexity of the human transcriptome. Use of tiling arrays
to identify transcribed fragments of the human genome; Emphasis of transcriptome analysis …

Targeted RNA sequencing reveals the deep complexity of the human transcriptome

TR Mercer, DJ Gerhardt, ME Dinger, J Crawford… - Nature …, 2012 - nature.com
Transcriptomic analyses have revealed an unexpected complexity to the human
transcriptome, whose breadth and depth exceeds current RNA sequencing capability …

Identification of transcribed sequences in Arabidopsis thaliana by using high-resolution genome tiling arrays

V Stolc, MP Samanta, W Tongprasit… - Proceedings of the …, 2005 - National Acad Sciences
Using a maskless photolithography method, we produced DNA oligonucleotide microarrays
with probe sequences tiled throughout the genome of the plant Arabidopsis thaliana. RNA …

Experimental annotation of the human genome using microarray technology

DD Shoemaker, EE Schadt, CD Armour, YD He… - Nature, 2001 - nature.com
The most important product of the sequencing of a genome is a complete, accurate
catalogue of genes and their products, primarily messenger RNA transcripts and their …

Applications of DNA tiling arrays to experimental genome annotation and regulatory pathway discovery

P Bertone, M Gerstein, M Snyder - Chromosome Research, 2005 - Springer
Microarrays have become a popular and important technology for surveying global patterns
in gene expression and regulation. A number of innovative experiments have extended …

The transcriptional landscape of the yeast genome defined by RNA sequencing

U Nagalakshmi, Z Wang, K Waern, C Shou, D Raha… - Science, 2008 - science.org
The identification of untranslated regions, introns, and coding regions within an organism
remains challenging. We developed a quantitative sequencing-based method called RNA …

[HTML][HTML] A comprehensive transcript index of the human genome generated using microarrays and computational approaches

EE Schadt, SW Edwards, D GuhaThakurta, D Holder… - Genome biology, 2004 - Springer
Background Computational and microarray-based experimental approaches were used to
generate a comprehensive transcript index for the human genome. Oligonucleotide probes …

A single-molecule long-read survey of the human transcriptome

D Sharon, H Tilgner, F Grubert, M Snyder - Nature biotechnology, 2013 - nature.com
Global RNA studies have become central to understanding biological processes, but
methods such as microarrays and short-read sequencing are unable to describe an entire …