Dynamics of Cations around DNA and Protein as Revealed by 23Na Diffusion NMR Spectroscopy
Counterions are vital for the structure and function of biomolecules. However, the behavior
of counterions remains elusive due to the difficulty in characterizing mobile ions. Here, we …
of counterions remains elusive due to the difficulty in characterizing mobile ions. Here, we …
Diffusion NMR-based comparison of electrostatic influences of DNA on various monovalent cations
Counterions are important constituents for the structure and function of nucleic acids. Using
7 Li and 133 Cs nuclear magnetic resonance (NMR) spectroscopy, we investigated how …
7 Li and 133 Cs nuclear magnetic resonance (NMR) spectroscopy, we investigated how …
Detecting counterion dynamics in DNA–protein association
CC Pletka, R Nepravishta… - Angewandte Chemie …, 2020 - Wiley Online Library
Due to a high density of negative charges on its surface, DNA condenses cations as
counterions, forming the so‐called “ion atmosphere”. Although the release of counterions …
counterions, forming the so‐called “ion atmosphere”. Although the release of counterions …
NMR cross-correlated relaxation rates reveal ion coordination sites in DNA
R Fiala, N Špačková… - Journal of the …, 2011 - ACS Publications
In this work, a novel NMR method for the identification of preferential coordination sites
between physiologically relevant counterions and nucleic acid bases is demonstrated. In …
between physiologically relevant counterions and nucleic acid bases is demonstrated. In …
Dynamics of ionic interactions at protein–nucleic acid interfaces
Conspectus Molecular association of proteins with nucleic acids is required for many
biological processes essential to life. Electrostatic interactions via ion pairs (salt bridges) of …
biological processes essential to life. Electrostatic interactions via ion pairs (salt bridges) of …
Sodium Dynamics in the Cellular Environment
Sodium ions are essential for the functions of biological cells, and they are maintained at the
balance between intra-and extracellular environments. The quantitative assessment of intra …
balance between intra-and extracellular environments. The quantitative assessment of intra …
Measuring local electrostatic potentials around nucleic acids by paramagnetic NMR spectroscopy
Electrostatic potentials around macromolecules in the presence of mobile charges are
difficult to assess especially for highly charged systems. Here, we report measurements of …
difficult to assess especially for highly charged systems. Here, we report measurements of …
Displacement of Mn2+ from RNA by K+, Mg2+, Neomycin B, and an Arginine-Rich Peptide: Indirect Detection of Nucleic Acid/Ligand Interactions Using …
JS Summers, J Shimko, FL Freedman… - Journal of the …, 2002 - ACS Publications
We have developed a novel method to study the interactions of nucleic acids with cationic
species. The method, called phosphorus relaxation enhancement (PhoRE), uses 1H …
species. The method, called phosphorus relaxation enhancement (PhoRE), uses 1H …
Direct observation of the ion-pair dynamics at a protein–DNA interface by NMR spectroscopy
KM Anderson, A Esadze, M Manoharan… - Journal of the …, 2013 - ACS Publications
Ion pairing is one of the most fundamental chemical interactions and is essential for
molecular recognition by biological macromolecules. From an experimental standpoint, very …
molecular recognition by biological macromolecules. From an experimental standpoint, very …
Sodium-23 NMR spin-lattice relaxation rate studies of mono-and bis-intercalation in DNA
H Eggert, J Dinesen, JP Jacobsen - Biochemistry, 1989 - ACS Publications
Jorgen Dinesen and Jens Peter Jacobsen* Department of Chemistry, Odense University,
Campusvej 55, DK-5230 Odense M, Denmark Received September 8, 1988; Revised …
Campusvej 55, DK-5230 Odense M, Denmark Received September 8, 1988; Revised …