Navigating the Landscape: A Comprehensive Review of Current Virus Databases

M Ritsch, NA Cassman, S Saghaei, M Marz - Viruses, 2023 - mdpi.com
Viruses are abundant and diverse entities that have important roles in public health,
ecology, and agriculture. The identification and surveillance of viruses rely on an …

Virus classification–where do you draw the line?

P Simmonds, P Aiewsakun - Archives of virology, 2018 - Springer
High-throughput sequencing (HTS) and its use in recovering and assembling novel virus
sequences from environmental, human clinical, veterinary and plant samples has unearthed …

Illuminating the virosphere through global metagenomics

L Call, S Nayfach, NC Kyrpides - Annual review of biomedical …, 2021 - annualreviews.org
Viruses are the most abundant biological entity on Earth, infect cellular organisms from all
domains of life, and are central players in the global biosphere. Over the last century, the …

Strengthening the interaction of the virology community with the international committee on taxonomy of viruses (ICTV) by linking virus names and their abbreviations …

CH Calisher, T Briese, JR Brister, RN Charrel… - Systematic …, 2019 - academic.oup.com
Abstract The International Committee on Taxonomy of Viruses (ICTV) is tasked with
classifying viruses into taxa (phyla to species) and devising taxon names. Virus names and …

Opportunities and challenges of data-driven virus discovery

C Lauber, S Seitz - Biomolecules, 2022 - mdpi.com
Virus discovery has been fueled by new technologies ever since the first viruses were
discovered at the end of the 19th century. Starting with mechanical devices that provided …

[HTML][HTML] Development of a virus detection and discovery pipeline using next generation sequencing

T Ho, IE Tzanetakis - Virology, 2014 - Elsevier
Next generation sequencing (NGS) has revolutionized virus discovery. Notwithstanding, a
vertical pipeline, from sample preparation to data analysis, has not been available to the …

IMG/VR v4: an expanded database of uncultivated virus genomes within a framework of extensive functional, taxonomic, and ecological metadata

AP Camargo, S Nayfach, IMA Chen… - Nucleic acids …, 2023 - academic.oup.com
Viruses are widely recognized as critical members of all microbiomes. Metagenomics
enables large-scale exploration of the global virosphere, progressively revealing the …

Metagenomic studies of viruses in weeds and wild plants: a powerful approach to characterise variable virus communities

B Hasiów-Jaroszewska, D Boezen, MP Zwart - Viruses, 2021 - mdpi.com
High throughput sequencing (HTS) has revolutionised virus detection and discovery,
allowing for the untargeted characterisation of whole viromes. Viral metagenomics studies …

Four principles to establish a universal virus taxonomy

P Simmonds, EM Adriaenssens, FM Zerbini… - PLoS …, 2023 - journals.plos.org
A universal taxonomy of viruses is essential for a comprehensive view of the virus world and
for communicating the complicated evolutionary relationships among viruses. However …

Perspective on taxonomic classification of uncultivated viruses

BE Dutilh, A Varsani, Y Tong, P Simmonds… - Current opinion in …, 2021 - Elsevier
Historically, virus taxonomy has been limited to describing viruses that were readily
cultivated in the laboratory or emerging in natural biomes. Metagenomic analyses, single …