[PDF][PDF] Accounting for Epistasis in Genomic Phenotype Prediction

E Vojgani - 2021 - ediss.uni-goettingen.de
Wide availability of genomic data has had a considerable impact on plant and animal
breeding programs which enables the study of genotypes and their relationships with …

Evaluation of a Computational Diagnostic for Epistasis in Plant Breeding Populations

R Howard, W Beavis, A Carriquiry - bioRxiv, 2016 - biorxiv.org
Previously we reported the inability of genomic prediction methods based on linear models
to accurately predict trait values composed of an epistatic genetic architecture. We also …

Genomic prediction in animals and plants: simulation of data, validation, reporting, and benchmarking

HD Daetwyler, MPL Calus, R Pong-Wong… - Genetics, 2013 - academic.oup.com
The genomic prediction of phenotypes and breeding values in animals and plants has
developed rapidly into its own research field. Results of genomic prediction studies are often …

Incorporating gene annotation into genomic prediction of complex phenotypes

N Gao, JWR Martini, Z Zhang, X Yuan, H Zhang… - Genetics, 2017 - academic.oup.com
Gao et al. propose several approaches to incorporate gene annotation into genomic
prediction and evaluate these new methods on populations..... Today, genomic prediction …

[PDF][PDF] Robust genomic modelling using expert knowledge about additive, dominance and epistasis variation

IG Hem, ML Selle, G Gorjanc, GA Fuglstad, A Riebler - BioRxiv, 2020 - scholar.archive.org
A major challenge with modelling non-additive genetic variation is that it is hard to separate
it from additive and environmental variation. In this paper, we describe how to alleviate this …

[HTML][HTML] Evaluation of approaches for estimating the accuracy of genomic prediction in plant breeding

SB Ould Estaghvirou, JO Ogutu, T Schulz-Streeck… - BMC genomics, 2013 - Springer
Background In genomic prediction, an important measure of accuracy is the correlation
between the predicted and the true breeding values. Direct computation of this quantity for …

Phenotype prediction under epistasis

E Vojgani, T Pook, H Simianer - Epistasis: Methods and Protocols, 2021 - Springer
Reliable methods of phenotype prediction from genomic data play an increasingly important
role in many areas of plant and animal breeding. Thus, developing methods that enhance …

Overview of Genomic Prediction Methods and the Associated Assumptions on the Variance of Marker Effect, and on the Architecture of the Target Trait

R Howard, D Jarquin, J Crossa - … prediction of complex traits: methods and …, 2022 - Springer
Genomic selection (GS) is a methodology that revolutionized the process of breeding
improved genetic materials in plant and animal breeding programs. It uses predicted …

[HTML][HTML] Genomic value prediction for quantitative traits under the epistatic model

Z Hu, Y Li, X Song, Y Han, X Cai, S Xu, W Li - BMC genetics, 2011 - Springer
Background Most quantitative traits are controlled by multiple quantitative trait loci (QTL).
The contribution of each locus may be negligible but the collective contribution of all loci is …

Genomic prediction methods accounting for nonadditive genetic effects

L Varona, A Legarra, MA Toro, ZG Vitezica - Genomic Prediction of …, 2022 - Springer
The use of genomic information for prediction of future phenotypes or breeding values for
the candidates to selection has become a standard over the last decade. However, most …