[PDF][PDF] Accounting for Epistasis in Genomic Phenotype Prediction
E Vojgani - 2021 - ediss.uni-goettingen.de
Wide availability of genomic data has had a considerable impact on plant and animal
breeding programs which enables the study of genotypes and their relationships with …
breeding programs which enables the study of genotypes and their relationships with …
Evaluation of a Computational Diagnostic for Epistasis in Plant Breeding Populations
Previously we reported the inability of genomic prediction methods based on linear models
to accurately predict trait values composed of an epistatic genetic architecture. We also …
to accurately predict trait values composed of an epistatic genetic architecture. We also …
Genomic prediction in animals and plants: simulation of data, validation, reporting, and benchmarking
HD Daetwyler, MPL Calus, R Pong-Wong… - Genetics, 2013 - academic.oup.com
The genomic prediction of phenotypes and breeding values in animals and plants has
developed rapidly into its own research field. Results of genomic prediction studies are often …
developed rapidly into its own research field. Results of genomic prediction studies are often …
Incorporating gene annotation into genomic prediction of complex phenotypes
N Gao, JWR Martini, Z Zhang, X Yuan, H Zhang… - Genetics, 2017 - academic.oup.com
Gao et al. propose several approaches to incorporate gene annotation into genomic
prediction and evaluate these new methods on populations..... Today, genomic prediction …
prediction and evaluate these new methods on populations..... Today, genomic prediction …
[PDF][PDF] Robust genomic modelling using expert knowledge about additive, dominance and epistasis variation
A major challenge with modelling non-additive genetic variation is that it is hard to separate
it from additive and environmental variation. In this paper, we describe how to alleviate this …
it from additive and environmental variation. In this paper, we describe how to alleviate this …
[HTML][HTML] Evaluation of approaches for estimating the accuracy of genomic prediction in plant breeding
SB Ould Estaghvirou, JO Ogutu, T Schulz-Streeck… - BMC genomics, 2013 - Springer
Background In genomic prediction, an important measure of accuracy is the correlation
between the predicted and the true breeding values. Direct computation of this quantity for …
between the predicted and the true breeding values. Direct computation of this quantity for …
Phenotype prediction under epistasis
E Vojgani, T Pook, H Simianer - Epistasis: Methods and Protocols, 2021 - Springer
Reliable methods of phenotype prediction from genomic data play an increasingly important
role in many areas of plant and animal breeding. Thus, developing methods that enhance …
role in many areas of plant and animal breeding. Thus, developing methods that enhance …
Overview of Genomic Prediction Methods and the Associated Assumptions on the Variance of Marker Effect, and on the Architecture of the Target Trait
Genomic selection (GS) is a methodology that revolutionized the process of breeding
improved genetic materials in plant and animal breeding programs. It uses predicted …
improved genetic materials in plant and animal breeding programs. It uses predicted …
[HTML][HTML] Genomic value prediction for quantitative traits under the epistatic model
Background Most quantitative traits are controlled by multiple quantitative trait loci (QTL).
The contribution of each locus may be negligible but the collective contribution of all loci is …
The contribution of each locus may be negligible but the collective contribution of all loci is …
Genomic prediction methods accounting for nonadditive genetic effects
The use of genomic information for prediction of future phenotypes or breeding values for
the candidates to selection has become a standard over the last decade. However, most …
the candidates to selection has become a standard over the last decade. However, most …