Species discrimination in Schima (Theaceae): Next‐generation super‐barcodes meet evolutionary complexity

XQ Yu, YZ Jiang, RA Folk, JL Zhao… - Molecular Ecology …, 2022 - Wiley Online Library
Plastid genome and nuclear ribosomal DNA (nrDNA) arrays, proposed recently as “super‐
barcodes,” might provide additional discriminatory power and overcome the limitations of …

Testing genome skimming for species discrimination in the large and taxonomically difficult genus Rhododendron

CN Fu, ZQ Mo, JB Yang, J Cai, LJ Ye… - Molecular Ecology …, 2022 - Wiley Online Library
Standard plant DNA barcodes based on 2–3 plastid regions, and nrDNA ITS show variable
levels of resolution, and fail to discriminate among species in many plant groups. Genome …

[HTML][HTML] Plastid super-barcodes as a tool for species discrimination in feather grasses (Poaceae: Stipa)

K Krawczyk, M Nobis, K Myszczyński, E Klichowska… - Scientific reports, 2018 - nature.com
Present study was designed to verify which or if any of plastome loci is a hotspot region for
mutations and hence might be useful for molecular species identification in feather grasses …

Do taxon-specific DNA barcodes improve species discrimination relative to universal barcodes in Lauraceae?

ZF Liu, H Ma, XY Zhang, XQ Ci, L Li… - Botanical Journal of …, 2022 - academic.oup.com
The aim of DNA barcoding is to enable fast and accurate species identification. However,
universal plant DNA barcodes often do not provide species-level discrimination, especially …

Testing DNA barcoding in closely related groups of Lysimachia L. (Myrsinaceae)

CAIYUN ZHANG, FY WANG… - Molecular Ecology …, 2012 - Wiley Online Library
It has been suggested that rbcL and matK are the core barcodes in plants, but they are not
powerful enough to distinguish between closely related plant groups. Additional barcodes …

[HTML][HTML] How many loci does it take to DNA barcode a crocus?

O Seberg, G Petersen - PloS one, 2009 - journals.plos.org
Background DNA barcoding promises to revolutionize the way taxonomists work, facilitating
species identification by using small, standardized portions of the genome as substitutes for …

[HTML][HTML] Comparative chloroplast genomes of eleven Schima (Theaceae) species: Insights into DNA barcoding and phylogeny

XQ Yu, BT Drew, JB Yang, LM Gao, DZ Li - PLoS One, 2017 - journals.plos.org
Schima is an ecologically and economically important woody genus in tea family
(Theaceae). Unresolved species delimitations and phylogenetic relationships within Schima …

[HTML][HTML] Efficient identification of the forest tree species in Aceraceae using DNA barcodes

YW Han, D Duan, XF Ma, Y Jia, ZL Liu… - Frontiers in Plant …, 2016 - frontiersin.org
Aceraceae is a large forest tree family that comprises many economically and ecologically
important species. However, because interspecific and/or intraspecific morphological …

[HTML][HTML] Whole plastome sequences from five ginger species facilitate marker development and define limits to barcode methodology

JN Vaughn, SR Chaluvadi, Tushar, L Rangan… - PLoS …, 2014 - journals.plos.org
Plants from the Zingiberaceae family are a key source of spices and herbal medicines.
Species identification within this group is critical in the search for known and possibly novel …

Testing and using complete plastomes and ribosomal DNA sequences as the next generation DNA barcodes in Panax (Araliaceae)

Y Ji, C Liu, Z Yang, L Yang, Z He… - Molecular Ecology …, 2019 - Wiley Online Library
Complete plastid genome (plastome) sequences and nuclear ribosomal DNA (nrDNA)
regions have been proposed as candidates for the next generation of DNA barcodes for …