Quantitative sequencing of 5-formylcytosine in DNA at single-base resolution

MJ Booth, G Marsico, M Bachman, D Beraldi… - Nature …, 2014 - nature.com
Recently, the cytosine modifications 5-hydroxymethylcytosine (5hmC) and 5-formylcytosine
(5fC) were found to exist in the genomic deoxyribonucleic acid (DNA) of a wide range of …

Oxidative bisulfite sequencing of 5-methylcytosine and 5-hydroxymethylcytosine

MJ Booth, TWB Ost, D Beraldi, NM Bell, MR Branco… - Nature protocols, 2013 - nature.com
To uncover the function of and interplay between the mammalian cytosine modifications 5-
methylcytosine (5mC) and 5-hydroxymethylcytosine (5hmC), new techniques and advances …

Bisulfite-free, base-resolution analysis of 5-formylcytosine at the genome scale

B Xia, D Han, X Lu, Z Sun, A Zhou, Q Yin, H Zeng… - Nature …, 2015 - nature.com
Active DNA demethylation in mammals involves oxidation of 5-methylcytosine (5mC) to 5-
hydroxymethylcytosine (5hmC), 5-formylcytosine (5fC) and 5-carboxylcytosine (5caC) …

[HTML][HTML] Base-resolution analysis of 5-hydroxymethylcytosine in the mammalian genome

M Yu, GC Hon, KE Szulwach, CX Song, L Zhang, A Kim… - Cell, 2012 - cell.com
Summary The study of 5-hydroxylmethylcytosines (5hmC) has been hampered by the lack of
a method to map it at single-base resolution on a genome-wide scale. Affinity purification …

Tet-assisted bisulfite sequencing of 5-hydroxymethylcytosine

M Yu, GC Hon, KE Szulwach, CX Song, P Jin, B Ren… - Nature protocols, 2012 - nature.com
A complete understanding of the potential function of 5-hydroxymethylcytosine (5-hmC), a
DNA cytosine modification in mammalian cells, requires an accurate single-base resolution …

[HTML][HTML] A sensitive approach to map genome-wide 5-hydroxymethylcytosine and 5-formylcytosine at single-base resolution

Z Sun, N Dai, JG Borgaro, A Quimby, D Sun, IR Corrêa… - Molecular cell, 2015 - cell.com
Summary Mapping genome-wide 5-hydroxymethylcytosine (5hmC) and 5-formylcytosine
(5fC) at single-base resolution is important to understand their biological functions. We …

Quantitative sequencing of 5-methylcytosine and 5-hydroxymethylcytosine at single-base resolution

MJ Booth, MR Branco, G Ficz, D Oxley, F Krueger… - Science, 2012 - science.org
5-Methylcytosine can be converted to 5-hydroxymethylcytosine (5hmC) in mammalian DNA
by the ten-eleven translocation (TET) enzymes. We introduce oxidative bisulfite sequencing …

[HTML][HTML] Ultrafast bisulfite sequencing detection of 5-methylcytosine in DNA and RNA

Q Dai, C Ye, I Irkliyenko, Y Wang, HL Sun, Y Gao… - Nature …, 2024 - nature.com
Bisulfite sequencing (BS-seq) to detect 5-methylcytosine (5mC) is limited by lengthy reaction
times, severe DNA damage, overestimation of 5mC level and incomplete C-to-U conversion …

5-Formylcytosine can be a stable DNA modification in mammals

M Bachman, S Uribe-Lewis, X Yang… - Nature chemical …, 2015 - nature.com
Formylcytosine (5fC) is a rare base found in mammalian DNA and thought to be involved in
active DNA demethylation. Here, we show that developmental dynamics of 5fC levels in …

Direct enzymatic sequencing of 5-methylcytosine at single-base resolution

T Wang, JM Fowler, L Liu, CE Loo, M Luo… - Nature chemical …, 2023 - nature.com
methylcytosine (5mC) is the most important DNA modification in mammalian genomes. The
ideal method for 5mC localization would be both nondestructive of DNA and direct, without …