Drug discovery with explainable artificial intelligence

J Jiménez-Luna, F Grisoni, G Schneider - Nature Machine Intelligence, 2020 - nature.com
Deep learning bears promise for drug discovery, including advanced image analysis,
prediction of molecular structure and function, and automated generation of innovative …

From black boxes to actionable insights: a perspective on explainable artificial intelligence for scientific discovery

Z Wu, J Chen, Y Li, Y Deng, H Zhao… - Journal of Chemical …, 2023 - ACS Publications
The application of Explainable Artificial Intelligence (XAI) in the field of chemistry has
garnered growing interest for its potential to justify the prediction of black-box machine …

Interpretable deep learning in drug discovery

K Preuer, G Klambauer, F Rippmann… - … and visualizing deep …, 2019 - Springer
Without any means of interpretation, neural networks that predict molecular properties and
bioactivities are merely black boxes. We will unravel these black boxes and will demonstrate …

Explainable artificial intelligence: A taxonomy and guidelines for its application to drug discovery

I Ponzoni, JA Páez Prosper… - Wiley Interdisciplinary …, 2023 - Wiley Online Library
Artificial intelligence (AI) is having a growing impact in many areas related to drug discovery.
However, it is still critical for their adoption by the medicinal chemistry community to achieve …

[HTML][HTML] Computational approaches to explainable artificial intelligence: advances in theory, applications and trends

JM Górriz, I Álvarez-Illán, A Álvarez-Marquina, JE Arco… - Information …, 2023 - Elsevier
Deep Learning (DL), a groundbreaking branch of Machine Learning (ML), has emerged as a
driving force in both theoretical and applied Artificial Intelligence (AI). DL algorithms, rooted …

A perspective on explanations of molecular prediction models

GP Wellawatte, HA Gandhi, A Seshadri… - Journal of Chemical …, 2023 - ACS Publications
Chemists can be skeptical in using deep learning (DL) in decision making, due to the lack of
interpretability in “black-box” models. Explainable artificial intelligence (XAI) is a branch of …

Towards explainable artificial intelligence

W Samek, KR Müller - … AI: interpreting, explaining and visualizing deep …, 2019 - Springer
In recent years, machine learning (ML) has become a key enabling technology for the
sciences and industry. Especially through improvements in methodology, the availability of …

Combining machine learning and computational chemistry for predictive insights into chemical systems

JA Keith, V Vassilev-Galindo, B Cheng… - Chemical …, 2021 - ACS Publications
Machine learning models are poised to make a transformative impact on chemical sciences
by dramatically accelerating computational algorithms and amplifying insights available from …

Deep learning and generative methods in cheminformatics and chemical biology: navigating small molecule space intelligently

DB Kell, S Samanta, N Swainston - Biochemical Journal, 2020 - portlandpress.com
The number of 'small'molecules that may be of interest to chemical biologists—chemical
space—is enormous, but the fraction that have ever been made is tiny. Most strategies are …

Transforming computational drug discovery with machine learning and AI

JS Smith, AE Roitberg, O Isayev - ACS medicinal chemistry letters, 2018 - ACS Publications
In this Viewpoint, we discuss the current progress in applications of machine learning (ML)
and artificial intelligence (AI) to meet the challenges of computational drug discovery. We …