A global survey of alternative splicing in allopolyploid cotton: landscape, complexity and regulation

M Wang, P Wang, F Liang, Z Ye, J Li, C Shen… - New …, 2018 - Wiley Online Library
Alternative splicing (AS) is a crucial regulatory mechanism in eukaryotes, which acts by
greatly increasing transcriptome diversity. The extent and complexity of AS has been …

Changes in alternative splicing in response to domestication and polyploidization in wheat

K Yu, M Feng, G Yang, L Sun, Z Qin, J Cao… - Plant …, 2020 - academic.oup.com
Alternative splicing (AS) occurs extensively in eukaryotes as an important mechanism for
regulating transcriptome complexity and proteome diversity, but variation in the AS …

A high quality Arabidopsis transcriptome for accurate transcript-level analysis of alternative splicing

R Zhang, CPG Calixto, Y Marquez… - Nucleic acids …, 2017 - academic.oup.com
Alternative splicing generates multiple transcript and protein isoforms from the same gene
and thus is important in gene expression regulation. To date, RNA-sequencing (RNA-seq) is …

Transcriptome survey reveals increased complexity of the alternative splicing landscape in Arabidopsis

Y Marquez, JWS Brown, C Simpson, A Barta… - Genome …, 2012 - genome.cshlp.org
Alternative splicing (AS) is a key regulatory mechanism that contributes to transcriptome and
proteome diversity. As very few genome-wide studies analyzing AS in plants are available …

The developing xylem transcriptome and genome-wide analysis of alternative splicing in Populus trichocarpa(black cottonwood) populations

H Bao, E Li, SD Mansfield, QCB Cronk, YA El-Kassaby… - BMC genomics, 2013 - Springer
Background Alternative splicing (AS) of genes is an efficient means of generating variation
in protein structure and function. AS variation has been observed between tissues, cell …

Genome-wide mapping of alternative splicing in Arabidopsis thaliana

SA Filichkin, HD Priest, SA Givan, R Shen… - Genome …, 2010 - genome.cshlp.org
Alternative splicing can enhance transcriptome plasticity and proteome diversity. In plants,
alternative splicing can be manifested at different developmental stages, and is frequently …

Alternative splicing landscapes in Arabidopsis thaliana across tissues and stress conditions highlight major functional differences with animals

G Martín, Y Márquez, F Mantica, P Duque, M Irimia - Genome biology, 2021 - Springer
Background Alternative splicing (AS) is a widespread regulatory mechanism in multicellular
organisms. Numerous transcriptomic and single-gene studies in plants have investigated AS …

Genome-wide analyses of alternative splicing in plants: opportunities and challenges

WB Barbazuk, Y Fu, KM McGinnis - Genome research, 2008 - genome.cshlp.org
Alternative splicing (AS) creates multiple mRNA transcripts from a single gene. While AS is
known to contribute to gene regulation and proteome diversity in animals, the study of its …

Genome-wide identification of evolutionarily conserved alternative splicing events in flowering plants

S Chamala, G Feng, C Chavarro… - … in bioengineering and …, 2015 - frontiersin.org
Alternative splicing (AS) plays important roles in many plant functions, but its conservation
across the plant kingdom is not known. We describe a methodology to identify AS events …

Genome-Wide Analysis of Alternative Splicing in Zea mays: Landscape and Genetic Regulation

SR Thatcher, W Zhou, A Leonard, BB Wang… - The Plant …, 2014 - academic.oup.com
Alternative splicing enhances transcriptome diversity in all eukaryotes and plays a role in
plant tissue identity and stress adaptation. To catalog new maize (Zea mays) transcripts and …