[HTML][HTML] Deep kernel and deep learning for genome-based prediction of single traits in multienvironment breeding trials
Deep learning (DL) is a promising method for genomic-enabled prediction. However, the
implementation of DL is difficult because many hyperparameters (number of hidden layers …
implementation of DL is difficult because many hyperparameters (number of hidden layers …
Multi-environment genomic prediction of plant traits using deep learners with dense architecture
A Montesinos-López… - G3: Genes …, 2018 - academic.oup.com
Genomic selection is revolutionizing plant breeding and therefore methods that improve
prediction accuracy are useful. For this reason, active research is being conducted to build …
prediction accuracy are useful. For this reason, active research is being conducted to build …
Multi-trait, multi-environment deep learning modeling for genomic-enabled prediction of plant traits
OA Montesinos-López… - G3: Genes, genomes …, 2018 - academic.oup.com
Multi-trait and multi-environment data are common in animal and plant breeding programs.
However, what is lacking are more powerful statistical models that can exploit the correlation …
However, what is lacking are more powerful statistical models that can exploit the correlation …
Deep kernel for genomic and near infrared predictions in multi-environment breeding trials
J Cuevas, O Montesinos-López… - G3: Genes …, 2019 - academic.oup.com
Kernel methods are flexible and easy to interpret and have been successfully used in
genomic-enabled prediction of various plant species. Kernel methods used in genomic …
genomic-enabled prediction of various plant species. Kernel methods used in genomic …
New deep learning genomic-based prediction model for multiple traits with binary, ordinal, and continuous phenotypes
OA Montesinos-López, J Martín-Vallejo… - G3: Genes, genomes …, 2019 - academic.oup.com
Multiple-trait experiments with mixed phenotypes (binary, ordinal and continuous) are not
rare in animal and plant breeding programs. However, there is a lack of statistical models …
rare in animal and plant breeding programs. However, there is a lack of statistical models …
[HTML][HTML] Nonlinear kernels, dominance, and envirotyping data increase the accuracy of genome-based prediction in multi-environment trials
Modern whole-genome prediction (WGP) frameworks that focus on multi-environment trials
(MET) integrate large-scale genomics, phenomics, and envirotyping data. However, the …
(MET) integrate large-scale genomics, phenomics, and envirotyping data. However, the …
[HTML][HTML] A stacking ensemble learning framework for genomic prediction
M Liang, T Chang, B An, X Duan, L Du, X Wang… - Frontiers in …, 2021 - frontiersin.org
Machine learning (ML) is perhaps the most useful tool for the interpretation of large genomic
datasets. However, the performance of a single machine learning method in genomic …
datasets. However, the performance of a single machine learning method in genomic …
[HTML][HTML] Multi-trait, multi-environment genomic prediction of durum wheat with genomic best linear unbiased predictor and deep learning methods
OA Montesinos-López, A Montesinos-López… - Frontiers in Plant …, 2019 - frontiersin.org
Although durum wheat (Triticum turgidum var. durum Desf.) is a minor cereal crop
representing just 5–7% of the world's total wheat crop, it is a staple food in Mediterranean …
representing just 5–7% of the world's total wheat crop, it is a staple food in Mediterranean …
[HTML][HTML] A guide on deep learning for complex trait genomic prediction
M Pérez-Enciso, LM Zingaretti - Genes, 2019 - mdpi.com
Deep learning (DL) has emerged as a powerful tool to make accurate predictions from
complex data such as image, text, or video. However, its ability to predict phenotypic values …
complex data such as image, text, or video. However, its ability to predict phenotypic values …
[HTML][HTML] Deep learning for predicting complex traits in spring wheat breeding program
Genomic selection (GS) is transforming the field of plant breeding and implementing models
that improve prediction accuracy for complex traits is needed. Analytical methods for …
that improve prediction accuracy for complex traits is needed. Analytical methods for …