Stereospecific interactions of proline residues in protein structures and complexes

R Bhattacharyya, P Chakrabarti - Journal of molecular biology, 2003 - Elsevier
The constrained backbone torsion angle of a proline (Pro) residue has usually been invoked
to explain its three-dimensional context in proteins. Here we show that specific interactions …

Influence of proline residues on protein conformation

MW MacArthur, JM Thornton - Journal of molecular biology, 1991 - Elsevier
To study the influence of proline residues on three-dimensional structure, an analysis has
been made of all proline residues and their local conformations extracted from the …

The influence of proline residues on α‐helical structure

DN Woolfson, DH Williams - FEBS letters, 1990 - Wiley Online Library
Proline lacks an amide proton when found within proteins. This precludes hydrogen bonding
between it and hydrogen bond acceptors, and thus often restricts the residue to the first four …

Inter-chain proline: proline contacts contribute to the stability of the triple helical conformation

RS Bhatnagar, N Pattabiraman… - Journal of …, 1988 - Taylor & Francis
The triple helical conformation observed in the collagen group of proteins is related to the
presence of large numbers of imino residues and is derived from the stereochemical …

The flexibility in the proline ring couples to the protein backbone

BK Ho, EA Coutsias, C Seok, KA Dill - Protein Science, 2005 - Wiley Online Library
In proteins, the proline ring exists predominantly in two discrete states. However, there is
also a small but significant amount of flexibility in the proline ring of high‐resolution protein …

Proline‐induced constraints in α‐helices

L Piela, G Némethy… - … : Original Research on …, 1987 - Wiley Online Library
The disrupting effect of a prolyl residue on an α‐helix has been analyzed by means of
conformational energy computations. In the preferred, nearly α‐helical conformations of Ac …

An electronic effect on protein structure

MP Hinderaker, RT Raines - Protein Science, 2003 - Wiley Online Library
The well‐known preference of the peptide bond for the trans conformation has been
attributed to steric effects. Here, we show that a proline residue with an N‐formyl group (Hi …

[HTML][HTML] Geometry of nonbonded interactions involving planar groups in proteins

P Chakrabarti, R Bhattacharyya - Progress in biophysics and molecular …, 2007 - Elsevier
Although hydrophobic interaction is the main contributing factor to the stability of the protein
fold, the specificity of the folding process depends on many directional interactions. An …

Importance of CH/π hydrogen bonds in recognition of the core motif in proline‐recognition domains: An Ab initio fragment molecular orbital study

T Ozawa, K Okazaki, K Kitaura - Journal of Computational …, 2011 - Wiley Online Library
We examined CH/π hydrogen bonds in protein/ligand complexes involving at least one
proline residue using the ab initio fragment molecular orbital (FMO) method and the program …

Properties of polyproline II, a secondary structure element implicated in protein–protein interactions

MV Cubellis, F Caillez, TL Blundell… - … Structure, Function, and …, 2005 - Wiley Online Library
The polyproline II (PPII) conformation of protein backbone is an important secondary
structure type. It is unusual in that, due to steric constraints, its main‐chain hydrogen‐bond …