BRD2 compartmentalizes the accessible genome

L Xie, P Dong, Y Qi, THS Hsieh, BP English, SK Jung… - Nature …, 2022 - nature.com
Mammalian chromosomes are organized into megabase-sized compartments that are
further subdivided into topologically associating domains (TADs). While the formation of …

Regulation of single-cell genome organization into TADs and chromatin nanodomains

Q Szabo, A Donjon, I Jerković, GL Papadopoulos… - Nature …, 2020 - nature.com
The genome folds into a hierarchy of three-dimensional structures within the nucleus. At the
sub-megabase scale, chromosomes form topologically associating domains (TADs) …

TAD-like single-cell domain structures exist on both active and inactive X chromosomes and persist under epigenetic perturbations

Y Cheng, M Liu, M Hu, S Wang - Genome Biology, 2021 - Springer
Abstract Background Topologically associating domains (TADs) are important building
blocks of three-dimensional genome architectures. The formation of TADs has been shown …

Cohesin promotes stochastic domain intermingling to ensure proper regulation of boundary-proximal genes

JM Luppino, DS Park, SC Nguyen, Y Lan, Z Xu… - Nature …, 2020 - nature.com
The human genome can be segmented into topologically associating domains (TADs),
which have been proposed to spatially sequester genes and regulatory elements through …

Two independent modes of chromatin organization revealed by cohesin removal

W Schwarzer, N Abdennur, A Goloborodko… - Nature, 2017 - nature.com
Imaging and chromosome conformation capture studies have revealed several layers of
chromosome organization, including segregation into megabase-sized active and inactive …

Two independent modes of chromosome organization are revealed by cohesin removal

W Schwarzer, N Abdennur, A Goloborodko… - bioRxiv, 2016 - biorxiv.org
The three-dimensional organization of chromosomes is tightly related to their biological
function. Both imaging and chromosome conformation capture studies have revealed …

Cohesin-based chromatin interactions enable regulated gene expression within preexisting architectural compartments

VC Seitan, AJ Faure, Y Zhan, RP McCord… - Genome …, 2013 - genome.cshlp.org
Chromosome conformation capture approaches have shown that interphase chromatin is
partitioned into spatially segregated Mb-sized compartments and sub-Mb-sized topological …

Systematic identification of protein combinations mediating chromatin looping

K Zhang, N Li, RI Ainsworth, W Wang - Nature communications, 2016 - nature.com
Chromatin looping plays a pivotal role in gene expression and other biological processes
through bringing distal regulatory elements into spatial proximity. The formation of chromatin …

Principles of genome folding into topologically associating domains

Q Szabo, F Bantignies, G Cavalli - Science advances, 2019 - science.org
Understanding the mechanisms that underlie chromosome folding within cell nuclei is
essential to determine the relationship between genome structure and function. The recent …

CTCF, WAPL and PDS5 proteins control the formation of TADs and loops by cohesin

G Wutz, C Varnai, K Nagasaka, DA Cisneros… - Biorxiv, 2017 - biorxiv.org
Mammalian genomes are organized into compartments, topologically-associating domains
(TADs) and loops to facilitate gene regulation and other chromosomal functions …