Amphioxus functional genomics and the origins of vertebrate gene regulation
Vertebrates have greatly elaborated the basic chordate body plan and evolved highly
distinctive genomes that have been sculpted by two whole-genome duplications. Here we …
distinctive genomes that have been sculpted by two whole-genome duplications. Here we …
Three amphioxus reference genomes reveal gene and chromosome evolution of chordates
The slow-evolving invertebrate amphioxus has an irreplaceable role in advancing our
understanding of the vertebrate origin and innovations. Here we resolve the nearly complete …
understanding of the vertebrate origin and innovations. Here we resolve the nearly complete …
The hagfish genome and the evolution of vertebrates
F Marlétaz, N Timoshevskaya, VA Timoshevskiy… - Nature, 2024 - nature.com
As the only surviving lineages of jawless fishes, hagfishes and lampreys provide a crucial
window into early vertebrate evolution,–. Here we investigate the complex history, timing …
window into early vertebrate evolution,–. Here we investigate the complex history, timing …
Constrained vertebrate evolution by pleiotropic genes
Despite morphological diversification of chordates over 550 million years of evolution, their
shared basic anatomical pattern (or 'bodyplan') remains conserved by unknown …
shared basic anatomical pattern (or 'bodyplan') remains conserved by unknown …
The amphioxus genome illuminates vertebrate origins and cephalochordate biology
LZ Holland, R Albalat, K Azumi… - Genome …, 2008 - genome.cshlp.org
Cephalochordates, urochordates, and vertebrates evolved from a common ancestor over
520 million years ago. To improve our understanding of chordate evolution and the origin of …
520 million years ago. To improve our understanding of chordate evolution and the origin of …
Deep conservation of the enhancer regulatory code in animals
INTRODUCTION In animals, gene regulatory networks specify cell identity in space and
time. Transcription of genes in these networks is modulated by a class of cis-regulatory …
time. Transcription of genes in these networks is modulated by a class of cis-regulatory …
Genome and transcriptome mechanisms driving cephalopod evolution
Cephalopods are known for their large nervous systems, complex behaviors and
morphological innovations. To investigate the genomic underpinnings of these features, we …
morphological innovations. To investigate the genomic underpinnings of these features, we …
The African coelacanth genome provides insights into tetrapod evolution
The discovery of a living coelacanth specimen in 1938 was remarkable, as this lineage of
lobe-finned fish was thought to have become extinct 70 million years ago. The modern …
lobe-finned fish was thought to have become extinct 70 million years ago. The modern …
The amphioxus genome and the evolution of the chordate karyotype
Abstract Lancelets ('amphioxus') are the modern survivors of an ancient chordate lineage,
with a fossil record dating back to the Cambrian period. Here we describe the structure and …
with a fossil record dating back to the Cambrian period. Here we describe the structure and …
A map of cis-regulatory elements and 3D genome structures in zebrafish
The zebrafish (Danio rerio) has been widely used in the study of human disease and
development, and about 70% of the protein-coding genes are conserved between the two …
development, and about 70% of the protein-coding genes are conserved between the two …