Utilizing graph machine learning within drug discovery and development

T Gaudelet, B Day, AR Jamasb, J Soman… - Briefings in …, 2021 - academic.oup.com
Graph machine learning (GML) is receiving growing interest within the pharmaceutical and
biotechnology industries for its ability to model biomolecular structures, the functional …

Graph convolutional networks for computational drug development and discovery

M Sun, S Zhao, C Gilvary, O Elemento… - Briefings in …, 2020 - academic.oup.com
Despite the fact that deep learning has achieved remarkable success in various domains
over the past decade, its application in molecular informatics and drug discovery is still …

Graph neural networks for conditional de novo drug design

C Abate, S Decherchi, A Cavalli - Wiley Interdisciplinary …, 2023 - Wiley Online Library
Drug design is costly in terms of resources and time. Generative deep learning techniques
are using increasing amounts of biochemical data and computing power to pave the way for …

An effective self-supervised framework for learning expressive molecular global representations to drug discovery

P Li, J Wang, Y Qiao, H Chen, Y Yu… - Briefings in …, 2021 - academic.oup.com
How to produce expressive molecular representations is a fundamental challenge in
artificial intelligence-driven drug discovery. Graph neural network (GNN) has emerged as a …

Prediction of pharmacological activities from chemical structures with graph convolutional neural networks

M Sakai, K Nagayasu, N Shibui, C Andoh… - Scientific reports, 2021 - nature.com
Many therapeutic drugs are compounds that can be represented by simple chemical
structures, which contain important determinants of affinity at the site of action. Recently …

Coloring molecules with explainable artificial intelligence for preclinical relevance assessment

J Jiménez-Luna, M Skalic, N Weskamp… - Journal of Chemical …, 2021 - ACS Publications
Graph neural networks are able to solve certain drug discovery tasks such as molecular
property prediction and de novo molecule generation. However, these models are …

Machine learning for synergistic network pharmacology: a comprehensive overview

F Noor, M Asif, UA Ashfaq, M Qasim… - Briefings in …, 2023 - academic.oup.com
Network pharmacology is an emerging area of systematic drug research that attempts to
understand drug actions and interactions with multiple targets. Network pharmacology has …

An adaptive graph learning method for automated molecular interactions and properties predictions

Y Li, CY Hsieh, R Lu, X Gong, X Wang, P Li… - nature machine …, 2022 - nature.com
Improving drug discovery efficiency is a core and long-standing challenge in drug discovery.
For this purpose, many graph learning methods have been developed to search potential …

Graph neural networks

G Corso, H Stark, S Jegelka, T Jaakkola… - Nature Reviews …, 2024 - nature.com
Graphs are flexible mathematical objects that can represent many entities and knowledge
from different domains, including in the life sciences. Graph neural networks (GNNs) are …

Graph neural networks for automated de novo drug design

J Xiong, Z Xiong, K Chen, H Jiang, M Zheng - Drug discovery today, 2021 - Elsevier
Highlights•GNN has attracted wide attention from the field of designing drug molecules.•The
applications of GNN in molecule scoring, molecule generation and optimization, and …