Recent advances in structure‐based enzyme engineering for functional reconstruction

SY Xu, L Zhou, Y Xu, HY Hong, C Dai… - Biotechnology and …, 2023 - Wiley Online Library
Structural information can help engineer enzymes. Usually, specific amino acids in particular
regions are targeted for functional reconstruction to enhance the catalytic performance …

Role of distal sites in enzyme engineering

J Gu, Y Xu, Y Nie - Biotechnology Advances, 2023 - Elsevier
The limitations associated with natural enzyme catalysis have triggered the rise of the field of
protein engineering. Traditional rational design was based on the analysis of protein …

Tailoring new enzyme functions by rational redesign

F Cedrone, A Ménez, E Quéméneur - Current opinion in structural biology, 2000 - Elsevier
Site-directed mutagenesis is still a very efficient strategy to elaborate improved enzymes.
Recently, advances have been made in developing rational strategies aimed at reshaping …

Protein engineering by efficient sequence space exploration through combination of directed evolution and computational design methodologies

S Pramanik, F Contreras, MD Davari… - Protein Engineering …, 2021 - Wiley Online Library
Directed evolution has matured in academia and industry as a versatile algorithm to
redesign enzymes to match demands in biotechnological applications (as documented by …

Building enzymes through design and evolution

EJ Hossack, FJ Hardy, AP Green - ACS Catalysis, 2023 - ACS Publications
Designing efficient enzymes is a formidable challenge at the forefront of modern
biocatalysis. Here, we review recent developments in the field and illustrate how the …

Structure-guided rational design of the substrate specificity and catalytic activity of an enzyme

JM Choi, HS Kim - Methods in Enzymology, 2020 - Elsevier
The quest for an enzyme with desired property is high for biocatalyic production of valuable
products in industrial biotechnology. Synthetic biology and metabolic engineering also …

Motif‐directed redesign of enzyme specificity

B Borgo, JJ Havranek - Protein Science, 2014 - Wiley Online Library
Computational protein design relies on several approximations, including the use of fixed
backbones and rotamers, to reduce protein design to a computationally tractable problem …

Evolution of an enzyme conformational ensemble guides design of an efficient biocatalyst

A Broom, RV Rakotoharisoa, MC Thompson, N Zarifi… - bioRxiv, 2020 - biorxiv.org
The creation of artificial enzymes is a key objective of computational protein design.
Although de novo enzymes have been successfully designed, these exhibit low catalytic …

The state-of-the-art strategies of protein engineering for enzyme stabilization

Q Liu, G Xun, Y Feng - Biotechnology advances, 2019 - Elsevier
Enzymes generated by natural recruitment and protein engineering have greatly contribute
in various sets of applications. However, their insufficient stability is a bottleneck that limit the …

De novo design of biocatalysts

DN Bolon, CA Voigt, SL Mayo - Current opinion in chemical biology, 2002 - Elsevier
The challenging field of de novo enzyme design is beginning to produce exciting results.
The application of powerful computational methods to functional protein design has recently …