Multi-omic measurements of heterogeneity in HeLa cells across laboratories

Y Liu, Y Mi, T Mueller, S Kreibich, EG Williams… - Nature …, 2019 - nature.com
Reproducibility in research can be compromised by both biological and technical variation,
but most of the focus is on removing the latter. Here we investigate the effects of biological …

The details in the distributions: why and how to study phenotypic variability

KA Geiler-Samerotte, CR Bauer, S Li, N Ziv… - Current opinion in …, 2013 - Elsevier
Highlights•Variation exists within genetically identical populations raised in nominally
identical environments.•This variation, called 'phenotypic variability,'is relevant in medicine …

Identifying phenotype-associated subpopulations by integrating bulk and single-cell sequencing data

D Sun, X Guan, AE Moran, LY Wu, DZ Qian… - Nature …, 2022 - nature.com
Single-cell RNA sequencing (scRNA-seq) distinguishes cell types, states and lineages
within the context of heterogeneous tissues. However, current single-cell data cannot …

Points of significance: replication

P Blainey, M Krzywinski, N Altman - Nature methods, 2014 - nature.com
Science relies heavily on replicate measurements. Additional replicates generally yield
more accurate and reliable summary statistics in experimental work. But the straightforward …

Quantifying E. coli Proteome and Transcriptome with Single-Molecule Sensitivity in Single Cells

Y Taniguchi, PJ Choi, GW Li, H Chen, M Babu, J Hearn… - science, 2010 - science.org
Protein and messenger RNA (mRNA) copy numbers vary from cell to cell in isogenic
bacterial populations. However, these molecules often exist in low copy numbers and are …

Developing insights into the mechanisms of evolution of bacterial pathogens from whole-genome sequences

J Bryant, C Chewapreecha, SD Bentley - Future microbiology, 2012 - Taylor & Francis
Evolution of bacterial pathogen populations has been detected in a variety of ways including
phenotypic tests, such as metabolic activity, reaction to antisera and drug resistance and …

[HTML][HTML] Genetic variability in a frozen batch of MCF-7 cells invisible in routine authentication affecting cell function

A Kleensang, MM Vantangoli, S Odwin-DaCosta… - Scientific reports, 2016 - nature.com
Common recommendations for cell line authentication, annotation and quality control fall
short addressing genetic heterogeneity. Within the Human Toxome Project, we demonstrate …

Functional analysis of structural variants in single cells using Strand-seq

H Jeong, K Grimes, KK Rauwolf, PM Bruch… - Nature …, 2023 - nature.com
Somatic structural variants (SVs) are widespread in cancer, but their impact on disease
evolution is understudied due to a lack of methods to directly characterize their functional …

Intraclonal protein expression heterogeneity in recombinant CHO cells

W Pilbrough, TP Munro, P Gray - PloS one, 2009 - journals.plos.org
Therapeutic glycoproteins have played a major role in the commercial success of
biotechnology in the post-genomic era. But isolating recombinant mammalian cell lines for …

Differential abundance testing on single-cell data using k-nearest neighbor graphs

E Dann, NC Henderson, SA Teichmann… - Nature …, 2022 - nature.com
Current computational workflows for comparative analyses of single-cell datasets typically
use discrete clusters as input when testing for differential abundance among experimental …