Multi-omic measurements of heterogeneity in HeLa cells across laboratories
Reproducibility in research can be compromised by both biological and technical variation,
but most of the focus is on removing the latter. Here we investigate the effects of biological …
but most of the focus is on removing the latter. Here we investigate the effects of biological …
The details in the distributions: why and how to study phenotypic variability
Highlights•Variation exists within genetically identical populations raised in nominally
identical environments.•This variation, called 'phenotypic variability,'is relevant in medicine …
identical environments.•This variation, called 'phenotypic variability,'is relevant in medicine …
Identifying phenotype-associated subpopulations by integrating bulk and single-cell sequencing data
Single-cell RNA sequencing (scRNA-seq) distinguishes cell types, states and lineages
within the context of heterogeneous tissues. However, current single-cell data cannot …
within the context of heterogeneous tissues. However, current single-cell data cannot …
Points of significance: replication
P Blainey, M Krzywinski, N Altman - Nature methods, 2014 - nature.com
Science relies heavily on replicate measurements. Additional replicates generally yield
more accurate and reliable summary statistics in experimental work. But the straightforward …
more accurate and reliable summary statistics in experimental work. But the straightforward …
Quantifying E. coli Proteome and Transcriptome with Single-Molecule Sensitivity in Single Cells
Protein and messenger RNA (mRNA) copy numbers vary from cell to cell in isogenic
bacterial populations. However, these molecules often exist in low copy numbers and are …
bacterial populations. However, these molecules often exist in low copy numbers and are …
Developing insights into the mechanisms of evolution of bacterial pathogens from whole-genome sequences
Evolution of bacterial pathogen populations has been detected in a variety of ways including
phenotypic tests, such as metabolic activity, reaction to antisera and drug resistance and …
phenotypic tests, such as metabolic activity, reaction to antisera and drug resistance and …
[HTML][HTML] Genetic variability in a frozen batch of MCF-7 cells invisible in routine authentication affecting cell function
A Kleensang, MM Vantangoli, S Odwin-DaCosta… - Scientific reports, 2016 - nature.com
Common recommendations for cell line authentication, annotation and quality control fall
short addressing genetic heterogeneity. Within the Human Toxome Project, we demonstrate …
short addressing genetic heterogeneity. Within the Human Toxome Project, we demonstrate …
Functional analysis of structural variants in single cells using Strand-seq
Somatic structural variants (SVs) are widespread in cancer, but their impact on disease
evolution is understudied due to a lack of methods to directly characterize their functional …
evolution is understudied due to a lack of methods to directly characterize their functional …
Intraclonal protein expression heterogeneity in recombinant CHO cells
W Pilbrough, TP Munro, P Gray - PloS one, 2009 - journals.plos.org
Therapeutic glycoproteins have played a major role in the commercial success of
biotechnology in the post-genomic era. But isolating recombinant mammalian cell lines for …
biotechnology in the post-genomic era. But isolating recombinant mammalian cell lines for …
Differential abundance testing on single-cell data using k-nearest neighbor graphs
Current computational workflows for comparative analyses of single-cell datasets typically
use discrete clusters as input when testing for differential abundance among experimental …
use discrete clusters as input when testing for differential abundance among experimental …