Comprehensive identification of RNA–protein interactions in any organism using orthogonal organic phase separation (OOPS)
RML Queiroz, T Smith, E Villanueva… - Nature …, 2019 - nature.com
Existing high-throughput methods to identify RNA-binding proteins (RBPs) are based on
capture of polyadenylated RNAs and cannot recover proteins that interact with …
capture of polyadenylated RNAs and cannot recover proteins that interact with …
[HTML][HTML] Purification of cross-linked RNA-protein complexes by phenol-toluol extraction
EC Urdaneta, CH Vieira-Vieira, T Hick… - Nature …, 2019 - nature.com
Recent methodological advances allowed the identification of an increasing number of RNA-
binding proteins (RBPs) and their RNA-binding sites. Most of those methods rely, however …
binding proteins (RBPs) and their RNA-binding sites. Most of those methods rely, however …
System-wide identification of RNA-binding proteins by interactome capture
A Castello, R Horos, C Strein, B Fischer… - Nature protocols, 2013 - nature.com
Owing to their preeminent biological functions, the repertoire of expressed RNA-binding
proteins (RBPs) and their activity states are highly informative about cellular systems. We …
proteins (RBPs) and their activity states are highly informative about cellular systems. We …
RNA interactome capture in Escherichia coli globally identifies RNA-binding proteins
TS Stenum, AD Kumar, FA Sandbaumhüter… - Nucleic Acids …, 2023 - academic.oup.com
RNA-binding proteins (RPBs) are deeply involved in fundamental cellular processes in
bacteria and are vital for their survival. Despite this, few studies have so far been dedicated …
bacteria and are vital for their survival. Despite this, few studies have so far been dedicated …
[HTML][HTML] In-cell identification and measurement of RNA-protein interactions
A Graindorge, I Pinheiro, A Nawrocka… - Nature …, 2019 - nature.com
Regulatory RNAs exert their cellular functions through RNA-binding proteins (RBPs).
Identifying RNA-protein interactions is therefore key for a molecular understanding of …
Identifying RNA-protein interactions is therefore key for a molecular understanding of …
Transcriptome-wide discovery of coding and noncoding RNA-binding proteins
Transcriptome-wide identification of RNA-binding proteins (RBPs) is a prerequisite for
understanding the posttranscriptional gene regulation networks. However, proteomic …
understanding the posttranscriptional gene regulation networks. However, proteomic …
Analysis of RNA–protein networks with RNP-MaP defines functional hubs on RNA
RNA–protein interaction networks govern many biological processes but are difficult to
examine comprehensively. We devised ribonucleoprotein networks analyzed by mutational …
examine comprehensively. We devised ribonucleoprotein networks analyzed by mutational …
[HTML][HTML] In vivo mapping of eukaryotic RNA interactomes reveals principles of higher-order organization and regulation
Identifying pairwise RNA-RNA interactions is key to understanding how RNAs fold and
interact with other RNAs inside the cell. We present a high-throughput approach …
interact with other RNAs inside the cell. We present a high-throughput approach …
[HTML][HTML] Signal-noise metrics for RNA binding protein identification reveal broad spectrum protein-RNA interaction frequencies and dynamics
JC Kristofich, CV Nicchitta - Nature Communications, 2023 - nature.com
Recent efforts towards the comprehensive identification of RNA-bound proteomes have
revealed a large, surprisingly diverse family of candidate RNA-binding proteins (RBPs) …
revealed a large, surprisingly diverse family of candidate RNA-binding proteins (RBPs) …
[HTML][HTML] Discovery of RNA-binding proteins and characterization of their dynamic responses by enhanced RNA interactome capture
JI Perez-Perri, B Rogell, T Schwarzl, F Stein… - Nature …, 2018 - nature.com
Following the realization that eukaryotic RNA-binding proteomes are substantially larger
than anticipated, we must now understand their detailed composition and dynamics …
than anticipated, we must now understand their detailed composition and dynamics …