Impacts of taxon-sampling schemes on Bayesian tip dating under the fossilized birth-death process
Evolutionary timescales can be inferred by molecular-clock analyses of genetic data and
fossil evidence. Bayesian phylogenetic methods such as tip dating provide a powerful …
fossil evidence. Bayesian phylogenetic methods such as tip dating provide a powerful …
A simulation-based evaluation of tip-dating under the fossilized birth–death process
Bayesian molecular dating is widely used to study evolutionary timescales. This procedure
usually involves phylogenetic analysis of nucleotide sequence data, with fossil-based …
usually involves phylogenetic analysis of nucleotide sequence data, with fossil-based …
Bayesian tip-dated phylogenetics in paleontology: topological effects and stratigraphic fit
B King - Systematic Biology, 2021 - academic.oup.com
The incorporation of stratigraphic data into phylogenetic analysis has a long history of
debate but is not currently standard practice for paleontologists. Bayesian tip-dated (or …
debate but is not currently standard practice for paleontologists. Bayesian tip-dated (or …
Data-driven speciation tree prior for better species divergence times in calibration-poor molecular phylogenies
Motivation Precise time calibrations needed to estimate ages of species divergence are not
always available due to fossil records' incompleteness. Consequently, clock calibrations …
always available due to fossil records' incompleteness. Consequently, clock calibrations …
Accounting for calibration uncertainty: Bayesian molecular dating as a “doubly intractable” problem
S Guindon - Systematic Biology, 2018 - academic.oup.com
This study introduces a new Bayesian technique for molecular dating that explicitly
accommodates for uncertainty in the phylogenetic position of calibrated nodes derived from …
accommodates for uncertainty in the phylogenetic position of calibrated nodes derived from …
Total-evidence dating under the fossilized birth–death process
Bayesian total-evidence dating involves the simultaneous analysis of morphological data
from the fossil record and morphological and sequence data from recent organisms, and it …
from the fossil record and morphological and sequence data from recent organisms, and it …
[HTML][HTML] Ignoring fossil age uncertainty leads to inaccurate topology and divergence time estimates in time calibrated tree inference
Time calibrated trees are challenging to estimate for many extinct groups of species due to
the incompleteness of the rock and fossil records. Additionally, the precise age of a sample …
the incompleteness of the rock and fossil records. Additionally, the precise age of a sample …
Bayesian dating of shallow phylogenies with a relaxed clock
Bayesian methods are increasingly being used to estimate divergence times without the
restrictive assumption of a global clock. Little is known about their reliability for shallow …
restrictive assumption of a global clock. Little is known about their reliability for shallow …
tipdatingbeast: an r package to assist the implementation of phylogenetic tip‐dating tests using beast
A Rieux, CE Khatchikian - Molecular Ecology Resources, 2017 - Wiley Online Library
Molecular tip dating of phylogenetic trees is a growing discipline that uses DNA sequences
sampled at different points in time to coestimate the timing of evolutionary events with rates …
sampled at different points in time to coestimate the timing of evolutionary events with rates …
Integrating fossil observations into phylogenetics using the fossilized birth–death model
Over the past decade, a new set of methods for estimating dated trees has emerged.
Originally referred to as the fossilized birth–death (FBD) process, this single model has …
Originally referred to as the fossilized birth–death (FBD) process, this single model has …