[HTML][HTML] Rapid genotyping of Achromobacter xylosoxidans, Acinetobacter baumannii, Klebsiella pneumoniae, Pseudomonas aeruginosa and Stenotrophomonas …

P Deschaght, L Van Simaey, E Decat… - Research in …, 2011 - Elsevier
Typing of bacteria is important for monitoring newly emerging pathogens and for examining
local outbreaks. We evaluated the randomly amplified polymorphic DNA technique in …

Technical aspects of random amplified polymorphic DNA (RAPD) technique in genotyping of bacterial strains.

A Gzyl, E Augustynowicz - Acta Microbiologica Polonica, 1999 - europepmc.org
Random Amplified Polymorphic DNA (RAPD) method became widely applied for sensitive,
efficient and fast distinguishing of different isolates of a given species, if pure culture is …

[HTML][HTML] RAPD typing of Klebsiella pneumoniae, Klebsiella oxytoca, Serratia marcescens and Pseudomonas aeruginosa isolates using standardized reagents

L Vogel, G Jones, S Triep, A Koek… - Clinical microbiology and …, 1999 - Elsevier
Objective To perform quality assessment of standardized random amplified polymorphic
DNA (RAPD) analysis for epidemiologic typing of Klebsiella pneumoniae, K. oxytoca …

Genomic fingerprinting of epidemic and endemic strains of Stenotrophomonas maltophilia (formerly Xanthomonas maltophilia) by arbitrarily primed PCR

CJ VanCouwenberghe, SH Cohen… - Journal of clinical …, 1995 - Am Soc Microbiol
Arbitrarily primed PCR (AP-PCR) was used to type 64 clinical isolates of Stenotrophomonas
maltophilia from 60 patients and the hands of one nurse. Forty-seven different patterns were …

Efficacy of two DNA fingerprinting methods for typing Acinetobacter baumannii isolates

LS Quelle, M Catalano - Diagnostic microbiology and infectious disease, 2001 - Elsevier
Performance of macrorestriction and repetitive extragenic palindromic DNA sequence-
based PCR (REP-PCR) to type Acinetobacter baumannii isolates was quantitatively …

Comparison of rapid automated laser fluorescence analysis of DNA fingerprints with four other computer-assisted approaches for studying relationships between …

CA Webster, KJ Towner… - Journal of medical …, 1996 - microbiologyresearch.org
The relationships between isolates suggested by a novel DNA typing method (RAPD-ALFA)
that combines randomly amplified polymorphic DNA with automated on-line laser …

[HTML][HTML] Microbial typing by machine learned DNA melt signatures

N Andini, B Wang, P Athamanolap, J Hardick… - Scientific reports, 2017 - nature.com
There is still an ongoing demand for a simple broad-spectrum molecular diagnostic assay
for pathogenic bacteria. For this purpose, we developed a single-plex High Resolution Melt …

Single-step polymerase chain reaction for combined gene detection and epidemiological typing in three bacterial models

P Saulnier, E Chachaty, F Hilali… - FEMS microbiology …, 1997 - academic.oup.com
We describe a new polymerase chain reaction (PCR) for combined gene detection and
epidemiological typing (COGEDET), which allows bacterial typing and gene detection in a …

Validation of use of whole-cell repetitive extragenic palindromic sequence-based PCR (REP-PCR) for typing strains belonging to the Acinetobacter calcoaceticus …

AM Snelling, P Gerner-Smidt, PM Hawkey… - Journal of Clinical …, 1996 - Am Soc Microbiol
Acinetobacter spp. are being reported with increasing frequency as causes of nosocomial
infection. In order to identify reservoirs of infection as quickly as possible, a rapid typing …

Pan-PCR, a computational method for designing bacterium-typing assays based on whole-genome sequence data

JY Yang, S Brooks, JA Meyer… - Journal of clinical …, 2013 - Am Soc Microbiol
With increasing rates of antibiotic resistance, bacterial infections have become more difficult
to treat, elevating the importance of surveillance and prevention. Effective surveillance relies …