[HTML][HTML] A genome-scale phylogeny of the kingdom Fungi

Y Li, JL Steenwyk, Y Chang, Y Wang, TY James… - Current Biology, 2021 - cell.com
Phylogenomic studies using genome-scale amounts of data have greatly improved
understanding of the tree of life. Despite the diversity, ecological significance, and …

A consistent phylogenetic backbone for the fungi

I Ebersberger, R de Matos Simoes… - Molecular Biology …, 2012 - academic.oup.com
The kingdom of fungi provides model organisms for biotechnology, cell biology, genetics,
and life sciences in general. Only when their phylogenetic relationships are stably resolved …

[HTML][HTML] Phylogenomic insights into the early diversification of fungi

JFH Strassert, MT Monaghan - Current Biology, 2022 - cell.com
Phylogenomic analyses have boosted our understanding of the evolutionary trajectories of
all living forms by providing continuous improvements to the tree of life. 1, 2, 3, 4, 5 Within …

[HTML][HTML] A fungal phylogeny based on 42 complete genomes derived from supertree and combined gene analysis

DA Fitzpatrick, ME Logue, JE Stajich, G Butler - BMC evolutionary biology, 2006 - Springer
Background To date, most fungal phylogenies have been derived from single gene
comparisons, or from concatenated alignments of a small number of genes. The increase in …

The fungal tree of life: from molecular systematics to genome‐scale phylogenies

JW Spatafora, MC Aime, IV Grigoriev… - The fungal …, 2017 - Wiley Online Library
In 1996 the genome of Saccharomyces cerevisiae was published and marked the beginning
of a new era in fungal biology (1). Since then, rapid advancements in both sequencing …

[HTML][HTML] Improving taxonomic delimitation of fungal species in the age of genomics and phenomics

A Stengel, KM Stanke, AC Quattrone… - Frontiers in …, 2022 - frontiersin.org
Species concepts have long provided a source of debate among biologists. These lively
debates have been important for reaching consensus on how to communicate across …

Fungal genomes and insights into the evolution of the kingdom

JE Stajich - Microbiology spectrum, 2017 - Am Soc Microbiol
The kingdom Fungi comprises species that inhabit nearly all ecosystems. Fungi exist as both
free-living and symbiotic unicellular and multicellular organisms with diverse morphologies …

A Robust Phylogenomic Time Tree for Biotechnologically and Medically Important Fungi in the Genera Aspergillus and Penicillium

JL Steenwyk, XX Shen, AL Lind, GH Goldman, A Rokas - MBio, 2019 - Am Soc Microbiol
The filamentous fungal family Aspergillaceae contains> 1,000 known species, mostly in the
genera Aspergillus and Penicillium. Several species are used in the food, biotechnology …

Fungal evolution: diversity, taxonomy and phylogeny of the Fungi

MA Naranjo‐Ortiz, T Gabaldón - Biological Reviews, 2019 - Wiley Online Library
The fungal kingdom comprises a hyperdiverse clade of heterotrophic eukaryotes
characterized by the presence of a chitinous cell wall, the loss of phagotrophic capabilities …

[HTML][HTML] Fungal species boundaries in the genomics era

DR Matute, VE Sepúlveda - Fungal Genetics and Biology, 2019 - Elsevier
Genomic data has opened new possibilities to understand how organisms change over
time, and could enable the discovery of previously undescribed species. Although taxonomy …