FEELnc: a tool for long non-coding RNA annotation and its application to the dog transcriptome
Whole transcriptome sequencing (RNA-seq) has become a standard for cataloguing and
monitoring RNA populations. One of the main bottlenecks, however, is to correctly identify …
monitoring RNA populations. One of the main bottlenecks, however, is to correctly identify …
Evolutionary analysis across mammals reveals distinct classes of long non-coding RNAs
Background Recent advances in transcriptome sequencing have enabled the discovery of
thousands of long non-coding RNAs (lncRNAs) across many species. Though several …
thousands of long non-coding RNAs (lncRNAs) across many species. Though several …
Annocript: a flexible pipeline for the annotation of transcriptomes able to identify putative long noncoding RNAs
The eukaryotic transcriptome is composed of thousands of coding and long non-coding
RNAs (lncRNAs). However, we lack a software platform to identify both RNA classes in a …
RNAs (lncRNAs). However, we lack a software platform to identify both RNA classes in a …
Genome-wide identification of tissue-specific long non-coding RNA in three farm animal species
Background Numerous long non-coding RNAs (lncRNAs) have been identified and their
roles in gene regulation in humans, mice, and other model organisms studied; however, far …
roles in gene regulation in humans, mice, and other model organisms studied; however, far …
The Landscape of long noncoding RNA classification
GS Laurent, C Wahlestedt, P Kapranov - Trends in genetics, 2015 - cell.com
Advances in the depth and quality of transcriptome sequencing have revealed many new
classes of long noncoding RNAs (lncRNAs). lncRNA classification has mushroomed to …
classes of long noncoding RNAs (lncRNAs). lncRNA classification has mushroomed to …
Mining mammalian transcript data for functional long non-coding RNAs
AN Khachane, PM Harrison - PloS one, 2010 - journals.plos.org
Background The role of long non-coding RNAs (lncRNAs) in controlling gene expression
has garnered increased interest in recent years. Sequencing projects, such as Fantom3 for …
has garnered increased interest in recent years. Sequencing projects, such as Fantom3 for …
LNCipedia 5: towards a reference set of human long non-coding RNAs
PJ Volders, J Anckaert, K Verheggen… - Nucleic acids …, 2019 - academic.oup.com
While long non-coding RNA (lncRNA) research in the past has primarily focused on the
discovery of novel genes, today it has shifted towards functional annotation of this large …
discovery of novel genes, today it has shifted towards functional annotation of this large …
ncFANs: a web server for functional annotation of long non-coding RNAs
Recent interest in the non-coding transcriptome has resulted in the identification of large
numbers of long non-coding RNAs (lncRNAs) in mammalian genomes, most of which have …
numbers of long non-coding RNAs (lncRNAs) in mammalian genomes, most of which have …
PLEK: a tool for predicting long non-coding RNAs and messenger RNAs based on an improved k-mer scheme
Background High-throughput transcriptome sequencing (RNA-seq) technology promises to
discover novel protein-coding and non-coding transcripts, particularly the identification of …
discover novel protein-coding and non-coding transcripts, particularly the identification of …
ALDB: a domestic-animal long noncoding RNA database
Background Long noncoding RNAs (lncRNAs) have attracted significant attention in recent
years due to their important roles in many biological processes. Domestic animals constitute …
years due to their important roles in many biological processes. Domestic animals constitute …