[HTML][HTML] The genomic landscape of reference genomes of cultivated human gut bacteria
Culture-independent metagenomic studies have revolutionized our understanding of the gut
microbiota. However, the lack of full genomes from cultured species is still a limitation for in …
microbiota. However, the lack of full genomes from cultured species is still a limitation for in …
[HTML][HTML] A human gut bacterial genome and culture collection for improved metagenomic analyses
Understanding gut microbiome functions requires cultivated bacteria for experimental
validation and reference bacterial genome sequences to interpret metagenome datasets …
validation and reference bacterial genome sequences to interpret metagenome datasets …
[HTML][HTML] 1,520 reference genomes from cultivated human gut bacteria enable functional microbiome analyses
Reference genomes are essential for metagenomic analyses and functional characterization
of the human gut microbiota. We present the Culturable Genome Reference (CGR), a …
of the human gut microbiota. We present the Culturable Genome Reference (CGR), a …
[HTML][HTML] New insights from uncultivated genomes of the global human gut microbiome
The genome sequences of many species of the human gut microbiome remain unknown,
largely owing to challenges in cultivating microorganisms under laboratory conditions. Here …
largely owing to challenges in cultivating microorganisms under laboratory conditions. Here …
A high-quality genome compendium of the human gut microbiome of Inner Mongolians
Metagenome-based resources have revealed the diversity and function of the human gut
microbiome, but further understanding is limited by insufficient genome quality and a lack of …
microbiome, but further understanding is limited by insufficient genome quality and a lack of …
[HTML][HTML] An expanded reference map of the human gut microbiome reveals hundreds of previously unknown species
The gut is the richest ecosystem of microbes in the human body and has great influence on
our health. Despite many efforts, the set of microbes inhabiting this environment is not fully …
our health. Despite many efforts, the set of microbes inhabiting this environment is not fully …
[HTML][HTML] A new genomic blueprint of the human gut microbiota
The composition of the human gut microbiota is linked to health and disease, but knowledge
of individual microbial species is needed to decipher their biological roles. Despite …
of individual microbial species is needed to decipher their biological roles. Despite …
[HTML][HTML] A unified catalog of 204,938 reference genomes from the human gut microbiome
Comprehensive, high-quality reference genomes are required for functional characterization
and taxonomic assignment of the human gut microbiota. We present the Unified Human …
and taxonomic assignment of the human gut microbiota. We present the Unified Human …
[HTML][HTML] Recovery of strain-resolved genomes from human microbiome through an integration framework of single-cell genomics and metagenomics
K Arikawa, K Ide, M Kogawa, T Saeki, T Yoda, T Endoh… - Microbiome, 2021 - Springer
Background Obtaining high-quality (HQ) reference genomes from microbial communities is
crucial for understanding the phylogeny and function of uncultured microbes in complex …
crucial for understanding the phylogeny and function of uncultured microbes in complex …
[HTML][HTML] Human reference gut microbiome catalog including newly assembled genomes from under-represented Asian metagenomes
Background Metagenome sampling bias for geographical location and lifestyle is partially
responsible for the incomplete catalog of reference genomes of gut microbial species. Thus …
responsible for the incomplete catalog of reference genomes of gut microbial species. Thus …