Denoising array-based comparative genomic hybridization data using wavelets
Array-based comparative genomic hybridization (array-CGH) provides a high-throughput,
high-resolution method to measure relative changes in DNA copy number simultaneously at …
high-resolution method to measure relative changes in DNA copy number simultaneously at …
Spatial normalization of array-CGH data
Background Array-based comparative genomic hybridization (array-CGH) is a recently
developed technique for analyzing changes in DNA copy number. As in all microarray …
developed technique for analyzing changes in DNA copy number. As in all microarray …
A versatile statistical analysis algorithm to detect genome copy number variation
RS Daruwala, A Rudra, H Ostrer… - Proceedings of the …, 2004 - National Acad Sciences
We have developed a versatile statistical analysis algorithm for the detection of genomic
aberrations in human cancer cell lines. The algorithm analyzes genomic data obtained from …
aberrations in human cancer cell lines. The algorithm analyzes genomic data obtained from …
SW-ARRAY: a dynamic programming solution for the identification of copy-number changes in genomic DNA using array comparative genome hybridization data
Comparative genome hybridization (CGH) to DNA microarrays (array CGH) is a technique
capable of detecting deletions and duplications in genomes at high resolution. However …
capable of detecting deletions and duplications in genomes at high resolution. However …
Analysis of array CGH data for cancer studies using fused quantile regression
Y Li, J Zhu - Bioinformatics, 2007 - academic.oup.com
Motivation: The identification of DNA copy number changes provides insights that may
advance our understanding of initiation and progression of cancer. Array-based comparative …
advance our understanding of initiation and progression of cancer. Array-based comparative …
Quantile smoothing of array CGH data
PHC Eilers, RX De Menezes - Bioinformatics, 2005 - academic.oup.com
Abstract Motivation: Plots of array Comparative Genomic Hybridization (CGH) data often
show special patterns: stretches of constant level (copy number) with sharp jumps between …
show special patterns: stretches of constant level (copy number) with sharp jumps between …
Normalization of array-CGH data: influence of copy number imbalances
Background High-resolution microarray-based comparative genomic hybridization (CGH)
techniques have successfully been applied to study copy number imbalances in a number of …
techniques have successfully been applied to study copy number imbalances in a number of …
ArrayCyGHt: a web application for analysis and visualization of array-CGH data
ArrayCyGHt is a web-based application tool for analysis and visualization of microarray-
comparative genomic hybridization (array-CGH) data. Full process of array-CGH data …
comparative genomic hybridization (array-CGH) data. Full process of array-CGH data …
A statistical change point model approach for the detection of DNA copy number variations in array CGH data
Array comparative genomic hybridization (aCGH) provides a high-resolution and high-
throughput technique for screening of copy number variations (CNVs) within the entire …
throughput technique for screening of copy number variations (CNVs) within the entire …
M-CGH: analysing microarray-based CGH experiments
Background Microarray-based comparative genomic hybridisation (array CGH) is a
technique by which variation in relative copy numbers between two genomes can be …
technique by which variation in relative copy numbers between two genomes can be …