[HTML][HTML] HP1 drives de novo 3D genome reorganization in early Drosophila embryos

F Zenk, Y Zhan, P Kos, E Löser, N Atinbayeva… - Nature, 2021 - nature.com
Fundamental features of 3D genome organization are established de novo in the early
embryo, including clustering of pericentromeric regions, the folding of chromosome arms …

Allelic reprogramming of 3D chromatin architecture during early mammalian development

Z Du, H Zheng, B Huang, R Ma, J Wu, X Zhang, J He… - Nature, 2017 - nature.com
In mammals, chromatin organization undergoes drastic reprogramming after fertilization.
However, the three-dimensional structure of chromatin and its reprogramming in …

Super-resolution imaging reveals distinct chromatin folding for different epigenetic states

AN Boettiger, B Bintu, JR Moffitt, S Wang, BJ Beliveau… - Nature, 2016 - nature.com
Metazoan genomes are spatially organized at multiple scales, from packaging of DNA
around individual nucleosomes to segregation of whole chromosomes into distinct …

Visualizing DNA folding and RNA in embryos at single-cell resolution

LJ Mateo, SE Murphy, A Hafner, IS Cinquini, CA Walker… - Nature, 2019 - nature.com
The establishment of cell types during development requires precise interactions between
genes and distal regulatory sequences. We have a limited understanding of how these …

Cohesin-dependent globules and heterochromatin shape 3D genome architecture in S. pombe

T Mizuguchi, G Fudenberg, S Mehta, JM Belton… - Nature, 2014 - nature.com
Eukaryotic genomes are folded into three-dimensional structures, such as self-associating
topological domains, the borders of which are enriched in cohesin and CCCTC-binding …

[HTML][HTML] In vitro reconstitution of chromatin domains shows a role for nucleosome positioning in 3D genome organization

E Oberbeckmann, K Quililan, P Cramer… - Nature Genetics, 2024 - nature.com
Eukaryotic genomes are organized into chromatin domains. The molecular mechanisms
driving the formation of these domains are difficult to dissect in vivo and remain poorly …

[HTML][HTML] Microscopy-based chromosome conformation capture enables simultaneous visualization of genome organization and transcription in intact organisms

AMC Gizzi, DI Cattoni, JB Fiche, SM Espinola, J Gurgo… - Molecular cell, 2019 - cell.com
Eukaryotic chromosomes are organized in multiple scales, from nucleosomes to
chromosome territories. Recently, genome-wide methods identified an intermediate level of …

Topological domains in mammalian genomes identified by analysis of chromatin interactions

JR Dixon, S Selvaraj, F Yue, A Kim, Y Li, Y Shen, M Hu… - Nature, 2012 - nature.com
The spatial organization of the genome is intimately linked to its biological function, yet our
understanding of higher order genomic structure is coarse, fragmented and incomplete. In …

Localized hedgehog activity controls spatial limits of wingless transcription in the Drosophila embryo

PW Ingham - Nature, 1993 - nature.com
CELL patterning in the body segments of the Drosophila embryo requires activity of the
segment polarity genes, a molecularly heterogeneous group defined by a generic mutant …

Parental-to-embryo switch of chromosome organization in early embryogenesis

S Collombet, N Ranisavljevic, T Nagano, C Varnai… - Nature, 2020 - nature.com
Paternal and maternal epigenomes undergo marked changes after fertilization. Recent
epigenomic studies have revealed the unusual chromatin landscapes that are present in …