ppGpp: a global regulator in Escherichia coli

LU Magnusson, A Farewell, T Nyström - Trends in microbiology, 2005 - cell.com
The small nucleotide ppGpp acts as a global regulator of gene expression in bacteria.
Proteomic analysis of cells lacking ppGpp has shown that this nucleotide might affect many …

Control of bacterial transcription, translation and replication by (p) ppGpp

A Srivatsan, JD Wang - Current opinion in microbiology, 2008 - Elsevier
The small nucleotides pppGpp and ppGpp (or (p) ppGpp) are rapidly synthesized in
response to nutritional stress. In Escherichia coli, the enzymes RelA and SpoT are triggered …

Characterization of RNA and DNA synthesis in Escherichia coli strains devoid of ppGpp

VJ Hernandez, H Bremer - Journal of Biological Chemistry, 1993 - ASBMB
The synthesis rates of DNA, rRNA, bulk mRNA, protein, and RNA polymerase beta-and beta'-
subunits were determined as functions of growth rate in a wild-type Escherichia coli strain …

[PDF][PDF] The magic spot: a ppGpp binding site on E. coli RNA polymerase responsible for regulation of transcription initiation

W Ross, CE Vrentas, P Sanchez-Vazquez, T Gaal… - Molecular cell, 2013 - cell.com
The global regulatory nucleotide ppGpp (" magic spot") regulates transcription from a large
subset of Escherichia coli promoters, illustrating how small molecules can control gene …

Genome-wide effects on Escherichia coli transcription from ppGpp binding to its two sites on RNA polymerase

P Sanchez-Vazquez, CN Dewey… - Proceedings of the …, 2019 - National Acad Sciences
The second messenger nucleotide ppGpp dramatically alters gene expression in bacteria to
adjust cellular metabolism to nutrient availability. ppGpp binds to two sites on RNA …

ppGpp is the major source of growth rate control in E. coli

K Potrykus, H Murphy, N Philippe… - Environmental …, 2011 - Wiley Online Library
It is widely accepted that the DNA, RNA and protein content of Enterobacteriaceae is
regulated as a function of exponential growth rates; macromolecular content increases with …

Differential regulation by ppGpp versus pppGpp in Escherichia coli

U Mechold, K Potrykus, H Murphy… - Nucleic acids …, 2013 - academic.oup.com
Both ppGpp and pppGpp are thought to function collectively as second messengers for
many complex cellular responses to nutritional stress throughout biology. There are few …

Diversity in (p) ppGpp metabolism and effectors

K Liu, AN Bittner, JD Wang - Current opinion in microbiology, 2015 - Elsevier
Highlights•(p) ppGpp metabolic enzymes sense diverse stresses.•(p) ppGpp regulates
transcription initiation by targeting RNAP or GTP levels.•(p) ppGpp controls replication …

Growth suppression by altered (p)ppGpp levels results from non-optimal resource allocation in Escherichia coli

M Zhu, X Dai - Nucleic acids research, 2019 - academic.oup.com
Understanding how bacteria coordinate gene expression with biomass growth to adapt to
various stress conditions remains a grand challenge in biology. Stress response is often …

Mechanism of regulation of transcription initiation by ppGpp. I. Effects of ppGpp on transcription initiation in vivo and in vitro

MM Barker, T Gaal, CA Josaitis, RL Gourse - Journal of molecular biology, 2001 - Elsevier
To determine the role of ppGpp in both negative and positive regulation of transcription
initiation during exponential growth in Escherichia coli, we examined transcription in …