A national pilot study: Clinical long-read sequencing of chromosomal rearrangements

J Eisfeldt, A Ameur, F Lenner, E ten Berk de Boer, M Ek… - 2023 - europepmc.org
Background: Clinical genetic laboratories often require comprehensive analysis of
chromosomal rearrangements/structural variants (SVs) which can range from gross …

Towards routine long-read sequencing for rare disease: a national pilot study on chromosomal rearrangements

J Eisfeldt, A Ameur, F Lenner, ET Berk de Boer, M Ek… - medRxiv, 2023 - medrxiv.org
Background Clinical genetic laboratories often require comprehensive analysis of
chromosomal rearrangements/structural variants (SVs) which can range from gross …

Linked-Read sequencing resolves complex structural variants

S Garcia, S Williams, AW Xu, J Herschleb, P Marks… - BioRxiv, 2017 - biorxiv.org
Large genomic structural variants (> 50bp) are important contributors to disease, yet they
remain one of the most difficult types of variation to accurately ascertain, in part because …

Exploiting emerging DNA sequencing technologies to study genomic rearrangements

S Meiers - 2018 - archiv.ub.uni-heidelberg.de
Structural variants (SVs) alter the structure of chromosomes by deleting, duplicating or
otherwise rearranging pieces of DNA. They contribute the majority of nucleotide differences …

Next-generation sequencing strategies enable routine detection of balanced chromosome rearrangements for clinical diagnostics and genetic research

ME Talkowski, C Ernst, A Heilbut, C Chiang… - The American Journal of …, 2011 - cell.com
The contribution of balanced chromosomal rearrangements to complex disorders remains
unclear because they are not detected routinely by genome-wide microarrays and clinical …

marching toward 100% whole genome sequencing

YH Shiao - Frontiers in Genetics, 2016 - frontiersin.org
Genomes are becoming recognized as dynamic molecules which modify their structures,
mediated through epigenetic mechanisms, in response to intrinsic and extrinsic stimulants …

[HTML][HTML] Complex genomic rearrangements: an underestimated cause of rare diseases

J Schuy, CM Grochowski, CMB Carvalho… - Trends in Genetics, 2022 - cell.com
Complex genomic rearrangements (CGRs) are known contributors to disease but are often
missed during routine genetic screening. Identifying CGRs requires (i) identifying copy …

Genomic disorders in the genomics era

CJZ Mendoza, C Gonzaga-Jauregui - Genomics of Rare Diseases, 2021 - Elsevier
From karyotyping to sequencing, the development and improvement of technologies that
allow to study the human genome at greater resolution have revealed the extent to which it …

A collection of read depth profiles at structural variant breakpoints

I Bezdvornykh, N Cherkasov, A Kanapin, A Samsonova - Scientific Data, 2023 - nature.com
SWaveform, a newly created open genome-wide resource for read depth signal in the
vicinity of structural variant (SV) breakpoints, aims to boost development of computational …

Detection and visualization of complex structural variants from long reads

Z Stephens, C Wang, RK Iyer, JP Kocher - BMC bioinformatics, 2018 - Springer
Background With applications in cancer, drug metabolism, and disease etiology,
understanding structural variation in the human genome is critical in advancing the thrusts of …