UFBoot2: improving the ultrafast bootstrap approximation
DT Hoang, O Chernomor… - Molecular biology …, 2018 - academic.oup.com
The standard bootstrap (SBS), despite being computationally intensive, is widely used in
maximum likelihood phylogenetic analyses. We recently proposed the ultrafast bootstrap …
maximum likelihood phylogenetic analyses. We recently proposed the ultrafast bootstrap …
Ultrafast approximation for phylogenetic bootstrap
BQ Minh, MAT Nguyen… - Molecular biology and …, 2013 - academic.oup.com
Nonparametric bootstrap has been a widely used tool in phylogenetic analysis to assess the
clade support of phylogenetic trees. However, with the rapidly growing amount of data, this …
clade support of phylogenetic trees. However, with the rapidly growing amount of data, this …
[HTML][HTML] MPBoot: fast phylogenetic maximum parsimony tree inference and bootstrap approximation
Background The nonparametric bootstrap is widely used to measure the branch support of
phylogenetic trees. However, bootstrapping is computationally expensive and remains a …
phylogenetic trees. However, bootstrapping is computationally expensive and remains a …
Survey of branch support methods demonstrates accuracy, power, and robustness of fast likelihood-based approximation schemes
Phylogenetic inference and evaluating support for inferred relationships is at the core of
many studies testing evolutionary hypotheses. Despite the popularity of nonparametric …
many studies testing evolutionary hypotheses. Despite the popularity of nonparametric …
How many bootstrap replicates are necessary?
ND Pattengale, M Alipour… - Journal of …, 2010 - liebertpub.com
Phylogenetic bootstrapping (BS) is a standard technique for inferring confidence values on
phylogenetic trees that is based on reconstructing many trees from minor variations of the …
phylogenetic trees that is based on reconstructing many trees from minor variations of the …
MUSCLE v5 enables improved estimates of phylogenetic tree confidence by ensemble bootstrapping
RC Edgar - BioRxiv, 2021 - biorxiv.org
Phylogenetic tree confidence is often estimated from a multiple sequence alignment (MSA)
using the Felsenstein bootstrap heuristic. However, this does not account for systematic …
using the Felsenstein bootstrap heuristic. However, this does not account for systematic …
How many bootstrap replicates are necessary?
ND Pattengale, M Alipour… - … Molecular Biology: 13th …, 2009 - Springer
Phylogenetic Bootstrapping (BS) is a standard technique for inferring confidence values on
phylogenetic trees that is based on reconstructing many trees from minor variations of the …
phylogenetic trees that is based on reconstructing many trees from minor variations of the …
A rapid bootstrap algorithm for the RAxML web servers
A Stamatakis, P Hoover, J Rougemont - Systematic biology, 2008 - academic.oup.com
Despite recent advances achieved by application of high-performance computing methods
and novel algorithmic techniques to maximum likelihood (ML)-based inference programs …
and novel algorithmic techniques to maximum likelihood (ML)-based inference programs …
Renewing Felsenstein's phylogenetic bootstrap in the era of big data
F Lemoine, JB Domelevo Entfellner, E Wilkinson… - Nature, 2018 - nature.com
Felsenstein's application of the bootstrap method to evolutionary trees is one of the most
cited scientific papers of all time. The bootstrap method, which is based on resampling and …
cited scientific papers of all time. The bootstrap method, which is based on resampling and …
[HTML][HTML] RAxML and FastTree: comparing two methods for large-scale maximum likelihood phylogeny estimation
Statistical methods for phylogeny estimation, especially maximum likelihood (ML), offer high
accuracy with excellent theoretical properties. However, RAxML, the current leading method …
accuracy with excellent theoretical properties. However, RAxML, the current leading method …