New reference genome sequences of hot pepper reveal the massive evolution of plant disease-resistance genes by retroduplication

S Kim, J Park, SI Yeom, YM Kim, E Seo, KT Kim… - Genome biology, 2017 - Springer
Background Transposable elements are major evolutionary forces which can cause new
genome structure and species diversification. The role of transposable elements in the …

Genome-wide comparative analyses reveal the dynamic evolution of nucleotide-binding leucine-rich repeat gene family among Solanaceae plants

E Seo, S Kim, SI Yeom, D Choi - Frontiers in plant science, 2016 - frontiersin.org
Plants have evolved an elaborate innate immune system against invading pathogens.
Within this system, intracellular nucleotide-binding leucine-rich repeat (NLR) immune …

An improved melon reference genome with single-molecule sequencing uncovers a recent burst of transposable elements with potential impact on genes

R Castanera, V Ruggieri, M Pujol… - Frontiers in plant …, 2020 - frontiersin.org
The published melon (Cucumis melo L.) reference genome assembly (v3. 6.1) has still 41.6
Mb (Megabases) of sequences unassigned to pseudo-chromosomes and about 57 Mb of …

High-throughput sequencing of black pepper root transcriptome

SMC Gordo, DG Pinheiro, ECO Moreira… - BMC plant biology, 2012 - Springer
Abstract Background Black pepper (Piper nigrum L.) is one of the most popular spices in the
world. It is used in cooking and the preservation of food and even has medicinal properties …

The de Novo Reference Genome and Transcriptome Assemblies of the Wild Tomato Species Solanum chilense Highlights Birth and Death of NLR Genes Between …

R Stam, T Nosenko, AC Hörger… - G3: Genes …, 2019 - academic.oup.com
Wild tomato species, like Solanum chilense, are important germplasm resources for
enhanced biotic and abiotic stress resistance in tomato breeding. S. chilense also serves as …

[HTML][HTML] Transposable elements and genome size variations in plants

SI Lee, NS Kim - Genomics & informatics, 2014 - ncbi.nlm.nih.gov
Although the number of protein-coding genes is not highly variable between plant taxa, the
DNA content in their genomes is highly variable, by as much as 2,056-fold from a 1C amount …

Evolutionary conservation, diversity and specificity of LTR‐retrotransposons in flowering plants: Insights from genome‐wide analysis and multi‐specific comparison

J Du, Z Tian, CS Hans, HM Laten, SB Cannon… - The Plant …, 2010 - Wiley Online Library
The availability of complete or nearly complete genome sequences from several plant
species permits detailed discovery and cross‐species comparison of transposable elements …

Genome structure and evolution of Antirrhinum majus L

M Li, D Zhang, Q Gao, Y Luo, H Zhang, B Ma, C Chen… - Nature Plants, 2019 - nature.com
Abstract Snapdragon (Antirrhinum majus L.), a member of the Plantaginaceae family, is an
important model for plant genetics and molecular studies on plant growth and development …

Analysis of TIR-and non-TIR-NBS-LRR disease resistance gene analogous in pepper: characterization, genetic variation, functional divergence and expression …

H Wan, W Yuan, Q Ye, R Wang, M Ruan, Z Li, G Zhou… - BMC genomics, 2012 - Springer
Abstract Background Pepper (Capsicum annuum L.) is one of the most important vegetable
crops worldwide. However, its yield and fruit quality can be severely threatened by several …

Comparative genomic paleontology across plant kingdom reveals the dynamics of TE-driven genome evolution

M El Baidouri, O Panaud - Genome biology and evolution, 2013 - academic.oup.com
Long terminal repeat-retrotransposons (LTR-RTs) are the most abundant class of
transposable elements (TEs) in plants. They strongly impact the structure, function, and …