Bacterial transcriptional regulators: A road map for functional, structural, and biophysical characterization

CM Pis Diez, MJ Juncos, M Villarruel Dujovne… - International Journal of …, 2022 - mdpi.com
The different niches through which bacteria move during their life cycle require a fast
response to the many environmental queues they encounter. The sensing of these stimuli …

Transcriptional regulators a la carte: engineering new effector specificities in bacterial regulatory proteins

TC Galvão, V De Lorenzo - Current Opinion in Biotechnology, 2006 - Elsevier
For many regulators of bacterial biodegradation pathways, small molecule/effector binding is
the signal for triggering transcriptional activation. Thus, regulation results from a cross-talk …

Coordination logic of the sensing machinery in the transcriptional regulatory network of Escherichia coli

SC Janga, H Salgado, A Martínez-Antonio… - Nucleic acids …, 2007 - academic.oup.com
The active and inactive state of transcription factors in growing cells is usually directed by
allosteric physicochemical signals or metabolites, which are in turn either produced in the …

Functional annotation of bacterial signal transduction systems: progress and challenges

D Martín-Mora, M Fernández, F Velando… - International journal of …, 2018 - mdpi.com
Bacteria possess a large number of signal transduction systems that sense and respond to
different environmental cues. Most frequently these are transcriptional regulators, two …

[PDF][PDF] Rethinking the bacterial genetic regulation

S Reverchon, P Sobetzko, W Nasser… - Biochemistry and …, 2015 - researchgate.net
Bacteria are the most ancient and abundant organisms on the earth. Whereas bacterial
organisms served as first cellular model systems for explorations of genetic control by …

A catalogue of signal molecules that interact with sensor kinases, chemoreceptors and transcriptional regulators

MA Matilla, F Velando, D Martín-Mora… - FEMS Microbiology …, 2022 - academic.oup.com
Bacteria have evolved many different signal transduction systems that sense signals and
generate a variety of responses. Generally, most abundant are transcriptional regulators …

Bioinformatics resources for the study of gene regulation in bacteria

J Collado-Vides, H Salgado, E Morett… - Journal of …, 2009 - Am Soc Microbiol
Genomics, which has been identified as the science of the century, is dramatically changing
the historically weak relationship between experimental and theoretical biology. The …

Diversity, versatility and complexity of bacterial gene regulation mechanisms: opportunities and drawbacks for applications in synthetic biology

I Bervoets, D Charlier - FEMS microbiology reviews, 2019 - academic.oup.com
Gene expression occurs in two essential steps: transcription and translation. In bacteria, the
two processes are tightly coupled in time and space, and highly regulated. Tight regulation …

Allostery and protein plasticity: the keystones for bacterial signaling and regulation

JA Imelio, F Trajtenberg, A Buschiazzo - Biophysical Reviews, 2021 - Springer
Bacteria sense intracellular and environmental signals using an array of proteins as
antennas. The information is transmitted from such sensory modules to other protein …

[HTML][HTML] Tuning transcriptional regulation through signaling: a predictive theory of allosteric induction

M Razo-Mejia, SL Barnes, NM Belliveau, G Chure… - Cell systems, 2018 - cell.com
Allosteric regulation is found across all domains of life, yet we still lack simple, predictive
theories that directly link the experimentally tunable parameters of a system to its input …