[HTML][HTML] Precision medicine and driver mutations: computational methods, functional assays and conformational principles for interpreting cancer drivers

R Nussinov, H Jang, CJ Tsai… - PLoS computational …, 2019 - journals.plos.org
At the root of the so-called precision medicine or precision oncology, which is our focus
here, is the hypothesis that cancer treatment would be considerably better if therapies were …

[HTML][HTML] Precision medicine review: rare driver mutations and their biophysical classification

R Nussinov, H Jang, CJ Tsai, F Cheng - Biophysical reviews, 2019 - Springer
How can biophysical principles help precision medicine identify rare driver mutations? A
major tenet of pragmatic approaches to precision oncology and pharmacology is that driver …

Precision cancer medicine: the future is now, only better

AM Tsimberidou, AMM Eggermont… - American Society of …, 2014 - ascopubs.org
The promise of precision medicine for cancer is already being realized with the recent
introduction of many targeted therapies, some with companion diagnostic tests that identify …

Precision oncology: the road ahead

D Senft, MDM Leiserson, E Ruppin, AR Ze'ev - Trends in molecular …, 2017 - cell.com
Current efforts in precision oncology largely focus on the benefit of genomics-guided
therapy. Yet, advances in sequencing techniques provide an unprecedented view of the …

Path toward precision oncology: review of targeted therapy studies and tools to aid in defining “actionability” of a molecular lesion and patient management support

YK Chae, AP Pan, AA Davis, SP Patel… - Molecular cancer …, 2017 - AACR
Precision medicine trials and targeted therapies have shifted to the forefront of oncology.
Although targeted therapies have shown initial promise, implementation across the broad …

[HTML][HTML] Identifying driver mutations in sequenced cancer genomes: computational approaches to enable precision medicine

BJ Raphael, JR Dobson, L Oesper, F Vandin - Genome medicine, 2014 - Springer
High-throughput DNA sequencing is revolutionizing the study of cancer and enabling the
measurement of the somatic mutations that drive cancer development. However, the …

Advances in computational approaches for prioritizing driver mutations and significantly mutated genes in cancer genomes

F Cheng, J Zhao, Z Zhao - Briefings in bioinformatics, 2016 - academic.oup.com
Cancer is often driven by the accumulation of genetic alterations, including single nucleotide
variants, small insertions or deletions, gene fusions, copy-number variations, and large …

On the road to precision cancer medicine: analysis of genomic biomarker actionability in 439 patients

M Schwaederle, GA Daniels, DE Piccioni… - Molecular cancer …, 2015 - AACR
Despite the increased use of molecular diagnostics, the extent to which patients who have
these tests harbor potentially actionable aberrations is unclear. We retrospectively reviewed …

[HTML][HTML] The future of precision oncology

SL Rulten, RP Grose, SA Gatz, JL Jones… - International Journal of …, 2023 - mdpi.com
Our understanding of the molecular mechanisms underlying cancer development and
evolution have evolved rapidly over recent years, and the variation from one patient to …

[HTML][HTML] Oncological drug discovery: AI meets structure-based computational research

MG González, APA Janssen, AP IJzerman… - Drug discovery today, 2022 - Elsevier
The integration of machine learning and structure-based methods has proven valuable in
the past as a way to prioritize targets and compounds in early drug discovery. In oncological …