PorinPredict: In Silico Identification of OprD Loss from WGS Data for Improved Genotype-Phenotype Predictions of P. aeruginosa Carbapenem Resistance

M Biggel, S Johler, T Roloff… - Microbiology …, 2023 - Am Soc Microbiol
The increasing integration of genomics into routine clinical diagnostics requires reliable
computational tools to identify determinants of antimicrobial resistance (AMR) from whole …

Whole-Genome Sequencing Reveals Diversity of Carbapenem-Resistant Pseudomonas aeruginosa Collected through CDC's Emerging Infections Program, United …

RA Stanton, D Campbell, GA McAllister… - Antimicrobial Agents …, 2022 - Am Soc Microbiol
ABSTRACT The CDC's Emerging Infections Program (EIP) conducted population-and
laboratory-based surveillance of US carbapenem-resistant Pseudomonas aeruginosa …

Direct prediction of carbapenem resistance in Pseudomonas aeruginosa by whole genome sequencing and metagenomic sequencing

B Liu, J Gao, XF Liu, G Rao, J Luo, P Han… - Journal of Clinical …, 2023 - Am Soc Microbiol
Carbapenem resistance is a major concern in the management of antibiotic-resistant
Pseudomonas aeruginosa infections. The direct prediction of carbapenem-resistant …

Inactivation of the oprD porin gene by a novel insertion sequence ISPa195 associated with large deletion in a carbapenem-resistant Pseudomonas aeruginosa …

Y Bocharova, T Savinova, DA Shagin… - Journal of Global …, 2019 - Elsevier
Objectives Alteration of the porin-encoding gene oprD by insertion sequences (ISs) is one
mechanism conferring carbapenem resistance in Pseudomonas aeruginosa. Here we …

Keeping up with the pathogens: Improved antimicrobial resistance detection and prediction in Pseudomonas aeruginosa

DE Madden, T Baird, SC Bell, KL McCarthy, EP Price… - MedRxiv, 2022 - medrxiv.org
Background Antimicrobial resistance (AMR) is an intensifying threat that requires urgent
mitigation to avoid a post-antibiotic era. The bacterial pathogen, Pseudomonas aeruginosa …

Mechanisms for Rapid Evolution of Carbapenem Resistance in a Clinical Isolate of Pseudomonas aeruginosa

C Xu, D Wang, X Zhang, H Liu, G Zhu, T Wang… - Frontiers in …, 2020 - frontiersin.org
Infections by Pseudomonas aeruginosa are difficult to cure due to its high intrinsic and
acquired antibiotic resistance. Once colonized the human host, and thanks to antibiotic …

Comparative genomics of a drug-resistant Pseudomonas aeruginosa panel and the challenges of antimicrobial resistance prediction from genomes

J Jeukens, I Kukavica-Ibrulj… - FEMS Microbiology …, 2017 - academic.oup.com
Antimicrobial resistance (AMR) is now recognized as a global threat to human health. The
accessibility of microbial whole-genome sequencing offers an invaluable opportunity for …

Development of carbapenem resistance in Pseudomonas aeruginosa is associated with OprD polymorphisms, particularly the amino acid substitution at codon 170

JC Shu, AJ Kuo, LH Su, TP Liu, MH Lee… - Journal of …, 2017 - academic.oup.com
Abstract Objectives Pan-susceptible Pseudomonas aeruginosa (PSPA) clinical isolates
carrying an OprD with loop 7 shortening (the group-1A allele) were found to rapidly develop …

Direct prediction of antimicrobial resistance in Pseudomonas aeruginosa by metagenomic next-generation sequencing

L Cao, H Yang, Z Huang, C Lu, F Chen… - Frontiers in …, 2024 - frontiersin.org
Objective Pseudomonas aeruginosa has strong drug resistance and can tolerate a variety of
antibiotics, which is a major problem in the management of antibiotic-resistant infections …

Genomic surveillance of clinical Pseudomonas aeruginosa isolates reveals an additive effect of carbapenemase production on carbapenem resistance

L Diorio-Toth, S Irum, RF Potter, MA Wallace… - Microbiology …, 2022 - Am Soc Microbiol
Carbapenem resistance in Pseudomonas aeruginosa is increasing globally, and
surveillance to define the mechanisms of such resistance in low-and middle-income …