PorinPredict: In Silico Identification of OprD Loss from WGS Data for Improved Genotype-Phenotype Predictions of P. aeruginosa Carbapenem Resistance
The increasing integration of genomics into routine clinical diagnostics requires reliable
computational tools to identify determinants of antimicrobial resistance (AMR) from whole …
computational tools to identify determinants of antimicrobial resistance (AMR) from whole …
Whole-Genome Sequencing Reveals Diversity of Carbapenem-Resistant Pseudomonas aeruginosa Collected through CDC's Emerging Infections Program, United …
RA Stanton, D Campbell, GA McAllister… - Antimicrobial Agents …, 2022 - Am Soc Microbiol
ABSTRACT The CDC's Emerging Infections Program (EIP) conducted population-and
laboratory-based surveillance of US carbapenem-resistant Pseudomonas aeruginosa …
laboratory-based surveillance of US carbapenem-resistant Pseudomonas aeruginosa …
Direct prediction of carbapenem resistance in Pseudomonas aeruginosa by whole genome sequencing and metagenomic sequencing
B Liu, J Gao, XF Liu, G Rao, J Luo, P Han… - Journal of Clinical …, 2023 - Am Soc Microbiol
Carbapenem resistance is a major concern in the management of antibiotic-resistant
Pseudomonas aeruginosa infections. The direct prediction of carbapenem-resistant …
Pseudomonas aeruginosa infections. The direct prediction of carbapenem-resistant …
Inactivation of the oprD porin gene by a novel insertion sequence ISPa195 associated with large deletion in a carbapenem-resistant Pseudomonas aeruginosa …
Y Bocharova, T Savinova, DA Shagin… - Journal of Global …, 2019 - Elsevier
Objectives Alteration of the porin-encoding gene oprD by insertion sequences (ISs) is one
mechanism conferring carbapenem resistance in Pseudomonas aeruginosa. Here we …
mechanism conferring carbapenem resistance in Pseudomonas aeruginosa. Here we …
Keeping up with the pathogens: Improved antimicrobial resistance detection and prediction in Pseudomonas aeruginosa
Background Antimicrobial resistance (AMR) is an intensifying threat that requires urgent
mitigation to avoid a post-antibiotic era. The bacterial pathogen, Pseudomonas aeruginosa …
mitigation to avoid a post-antibiotic era. The bacterial pathogen, Pseudomonas aeruginosa …
Mechanisms for Rapid Evolution of Carbapenem Resistance in a Clinical Isolate of Pseudomonas aeruginosa
C Xu, D Wang, X Zhang, H Liu, G Zhu, T Wang… - Frontiers in …, 2020 - frontiersin.org
Infections by Pseudomonas aeruginosa are difficult to cure due to its high intrinsic and
acquired antibiotic resistance. Once colonized the human host, and thanks to antibiotic …
acquired antibiotic resistance. Once colonized the human host, and thanks to antibiotic …
Comparative genomics of a drug-resistant Pseudomonas aeruginosa panel and the challenges of antimicrobial resistance prediction from genomes
J Jeukens, I Kukavica-Ibrulj… - FEMS Microbiology …, 2017 - academic.oup.com
Antimicrobial resistance (AMR) is now recognized as a global threat to human health. The
accessibility of microbial whole-genome sequencing offers an invaluable opportunity for …
accessibility of microbial whole-genome sequencing offers an invaluable opportunity for …
Development of carbapenem resistance in Pseudomonas aeruginosa is associated with OprD polymorphisms, particularly the amino acid substitution at codon 170
JC Shu, AJ Kuo, LH Su, TP Liu, MH Lee… - Journal of …, 2017 - academic.oup.com
Abstract Objectives Pan-susceptible Pseudomonas aeruginosa (PSPA) clinical isolates
carrying an OprD with loop 7 shortening (the group-1A allele) were found to rapidly develop …
carrying an OprD with loop 7 shortening (the group-1A allele) were found to rapidly develop …
Direct prediction of antimicrobial resistance in Pseudomonas aeruginosa by metagenomic next-generation sequencing
L Cao, H Yang, Z Huang, C Lu, F Chen… - Frontiers in …, 2024 - frontiersin.org
Objective Pseudomonas aeruginosa has strong drug resistance and can tolerate a variety of
antibiotics, which is a major problem in the management of antibiotic-resistant infections …
antibiotics, which is a major problem in the management of antibiotic-resistant infections …
Genomic surveillance of clinical Pseudomonas aeruginosa isolates reveals an additive effect of carbapenemase production on carbapenem resistance
Carbapenem resistance in Pseudomonas aeruginosa is increasing globally, and
surveillance to define the mechanisms of such resistance in low-and middle-income …
surveillance to define the mechanisms of such resistance in low-and middle-income …
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