An orthology-based analysis of pathogenic protozoa impacting global health: an improved comparative genomics approach with prokaryotes and model eukaryote …
RRC Cuadrat, SM da Serra Cruz… - Omics: a journal of …, 2014 - liebertpub.com
A key focus in 21st century integrative biology and drug discovery for neglected tropical and
other diseases has been the use of BLAST-based computational methods for identification …
other diseases has been the use of BLAST-based computational methods for identification …
eggNOG 4.5: a hierarchical orthology framework with improved functional annotations for eukaryotic, prokaryotic and viral sequences
Abstract eggNOG is a public resource that provides Orthologous Groups (OGs) of proteins at
different taxonomic levels, each with integrated and summarized functional annotations …
different taxonomic levels, each with integrated and summarized functional annotations …
OrthoDB v10: sampling the diversity of animal, plant, fungal, protist, bacterial and viral genomes for evolutionary and functional annotations of orthologs
EV Kriventseva, D Kuznetsov, F Tegenfeldt… - Nucleic acids …, 2019 - academic.oup.com
Abstract OrthoDB (https://www. orthodb. org) provides evolutionary and functional
annotations of orthologs. This update features a major scaling up of the resource coverage …
annotations of orthologs. This update features a major scaling up of the resource coverage …
[HTML][HTML] Improved orthologous databases to ease protozoan targets inference
N Kotowski, R Jardim, AMR Dávila - Parasites & Vectors, 2015 - Springer
Background Homology inference helps on identifying similarities, as well as differences
among organisms, which provides a better insight on how closely related one might be to …
among organisms, which provides a better insight on how closely related one might be to …
eggNOG 5.0: a hierarchical, functionally and phylogenetically annotated orthology resource based on 5090 organisms and 2502 viruses
Abstract eggNOG is a public database of orthology relationships, gene evolutionary histories
and functional annotations. Here, we present version 5.0, featuring a major update of the …
and functional annotations. Here, we present version 5.0, featuring a major update of the …
OrthoDB in 2020: evolutionary and functional annotations of orthologs
EM Zdobnov, D Kuznetsov, F Tegenfeldt… - Nucleic acids …, 2021 - academic.oup.com
OrthoDB provides evolutionary and functional annotations of orthologs, inferred for a vast
number of available organisms. OrthoDB is leading in the coverage and genomic diversity …
number of available organisms. OrthoDB is leading in the coverage and genomic diversity …
OrthoDB v8: update of the hierarchical catalog of orthologs and the underlying free software
Orthology, refining the concept of homology, is the cornerstone of evolutionary comparative
studies. With the ever-increasing availability of genomic data, inference of orthology has …
studies. With the ever-increasing availability of genomic data, inference of orthology has …
VEuPathDB: the eukaryotic pathogen, vector and host bioinformatics resource center in 2023
J Alvarez-Jarreta, B Amos, C Aurrecoechea… - Nucleic acids …, 2024 - academic.oup.com
Abstract The Eukaryotic Pathogen, Vector and Host Informatics Resource (VEuPathDB,
https://veupathdb. org) is a Bioinformatics Resource Center funded by the National Institutes …
https://veupathdb. org) is a Bioinformatics Resource Center funded by the National Institutes …
OrthoDB v11: annotation of orthologs in the widest sampling of organismal diversity
D Kuznetsov, F Tegenfeldt, M Manni… - Nucleic Acids …, 2023 - academic.oup.com
OrthoDB provides evolutionary and functional annotations of genes in a diverse sampling of
eukaryotes, prokaryotes, and viruses. Genomics continues to accelerate our exploration of …
eukaryotes, prokaryotes, and viruses. Genomics continues to accelerate our exploration of …
[HTML][HTML] ProFun: A web server for functional enrichment analysis of parasitic protozoan genes
PJ Huang, YC Weng, KY Huang, CC Lee… - Journal of Microbiology …, 2024 - Elsevier
Background The initial step to interpreting putative biological functions from comparative
multi-omics studies usually starts from a differential expressed gene list followed by …
multi-omics studies usually starts from a differential expressed gene list followed by …