SNP Marker Discovery in Pima Cotton (Gossypium barbadense L.) Leaf Transcriptomes

P Kottapalli, M Ulloa, KR Kottapalli… - Genomics …, 2016 - journals.sagepub.com
The objective of this study was to explore the known narrow genetic diversity and discover
single-nucleotide polymorphic (SNP) markers for marker-assisted breeding within Pima …

A Long‐Read Transcriptome Assembly of Cotton (Gossypium hirsutum L.) and Intraspecific Single Nucleotide Polymorphism Discovery

H Ashrafi, AM Hulse‐Kemp, F Wang, SS Yang… - The plant …, 2015 - Wiley Online Library
Upland cotton (Gossypium hirsutum L.) has a narrow germplasm base, which constrains
marker development and hampers intraspecific breeding. A pressing need exists for high …

Detection, validation, and application of genotyping‐by‐sequencing based single nucleotide polymorphisms in upland cotton

MS Islam, GN Thyssen, JN Jenkins… - The Plant …, 2015 - Wiley Online Library
The presence of two closely related subgenomes in the allotetraploid Upland cotton,
combined with a narrow genetic base of the cultivated varieties, has hindered the …

Development of a core set of SNP markers for the identification of upland cotton cultivars in China

M Kuang, SJ Wei, YQ Wang, DY Zhou, MA Lei… - Journal of integrative …, 2016 - Elsevier
Considering the advantages of single nucleotide polymorphisms (SNP) in genotyping and
variety identification, the first set public SNP markers at Cotton Marker Database (http://www …

Diversity analysis of cotton (Gossypium hirsutum L.) germplasm using the CottonSNP63K Array

LL Hinze, AM Hulse-Kemp, IW Wilson, QH Zhu… - BMC Plant …, 2017 - Springer
Background Cotton germplasm resources contain beneficial alleles that can be exploited to
develop germplasm adapted to emerging environmental and climate conditions. Accessions …

Transcriptome and Complexity-Reduced, DNA-Based Identification of Intraspecies Single-Nucleotide Polymorphisms in the Polyploid Gossypium hirsutum L.

QH Zhu, A Spriggs, JM Taylor… - G3: Genes, Genomes …, 2014 - academic.oup.com
Varietal single nucleotide polymorphisms (SNPs) are the differences within one of the two
subgenomes between different tetraploid cotton varieties and have not been practically used …

Genotyping-by-Sequencing of Gossypium hirsutum Races and Cultivars Uncovers Novel Patterns of Genetic Relationships and Domestication Footprints

S Zhang, Y Cai, J Guo, K Li, R Peng… - Evolutionary …, 2019 - journals.sagepub.com
Determining the genetic rearrangement and domestication footprints in Gossypium hirsutum
cultivars and primitive race genotypes are essential for effective gene conservation efforts …

Development and bin mapping of gene-associated interspecific SNPs for cotton (Gossypium hirsutum L.) introgression breeding efforts

AM Hulse-Kemp, H Ashrafi, X Zheng, F Wang… - BMC genomics, 2014 - Springer
Abstract Background Cotton (Gossypium spp.) is the largest producer of natural fibers for
textile and is an important crop worldwide. Crop production is comprised primarily of G …

Sampling nucleotide diversity in cotton

A Van Deynze, K Stoffel, M Lee, TA Wilkins, A Kozik… - BMC plant biology, 2009 - Springer
Background Cultivated cotton is an annual fiber crop derived mainly from two perennial
species, Gossypium hirsutum L. or upland cotton, and G. barbadense L., extra long-staple …

[图书][B] SNP characterization and genetic and molecular analysis of mutants affecting fiber development in cotton

C An - 2008 - search.proquest.com
Cotton (Gossypium spp.) is the world's leading textile fiber crop, and an important source of
oil and protein. Insufficient candidate gene derived-markers suitable for genetic mapping …