Integrating genetic and non-genetic determinants of cancer evolution by single-cell multi-omics

AS Nam, R Chaligne, DA Landau - Nature Reviews Genetics, 2021 - nature.com
Cancer represents an evolutionary process through which growing malignant populations
genetically diversify, leading to tumour progression, relapse and resistance to therapy. In …

[HTML][HTML] Unraveling the complexity of the cancer microenvironment with multidimensional genomic and cytometric technologies

NL De Vries, A Mahfouz, F Koning… - Frontiers in …, 2020 - frontiersin.org
Cancers are characterized by extensive heterogeneity that occurs intratumorally, between
lesions, and across patients. To study cancer as a complex biological system …

[HTML][HTML] Methods and applications for single-cell and spatial multi-omics

K Vandereyken, A Sifrim, B Thienpont… - Nature Reviews Genetics, 2023 - nature.com
The joint analysis of the genome, epigenome, transcriptome, proteome and/or metabolome
from single cells is transforming our understanding of cell biology in health and disease. In …

[HTML][HTML] The technological landscape and applications of single-cell multi-omics

A Baysoy, Z Bai, R Satija, R Fan - Nature Reviews Molecular Cell …, 2023 - nature.com
Single-cell multi-omics technologies and methods characterize cell states and activities by
simultaneously integrating various single-modality omics methods that profile the …

[HTML][HTML] Statistical single cell multi-omics integration

M Colomé-Tatché, FJ Theis - Current Opinion in Systems Biology, 2018 - Elsevier
Single cell high throughput genomic measurements are revolutionizing the fields of biology
and medicine, providing a means to tackle biological problems that have thus far been …

Mapping genomic and epigenomic evolution in cancer ecosystems

T Ushijima, SJ Clark, P Tan - Science, 2021 - science.org
Cancer is a major cause of global mortality underpinned by genomic and epigenomic
derangements. Here, we highlight the importance of multimodal data integration in …

[HTML][HTML] Using single-cell multiple omics approaches to resolve tumor heterogeneity

MA Ortega, O Poirion, X Zhu, S Huang… - Clinical and translational …, 2017 - Springer
It has become increasingly clear that both normal and cancer tissues are composed of
heterogeneous populations. Genetic variation can be attributed to the downstream effects of …

[HTML][HTML] Single cell multi-omics reveal intra-cell-line heterogeneity across human cancer cell lines

Q Zhu, X Zhao, Y Zhang, Y Li, S Liu, J Han… - Nature …, 2023 - nature.com
Human cancer cell lines have long served as tools for cancer research and drug discovery,
but the presence and the source of intra-cell-line heterogeneity remain elusive. Here, we …

Single-cell (multi) omics technologies

L Chappell, AJC Russell, T Voet - Annual review of genomics …, 2018 - annualreviews.org
Single-cell multiomics technologies typically measure multiple types of molecule from the
same individual cell, enabling more profound biological insight than can be inferred by …

Defining cell identity with single‐cell omics

L Mincarelli, A Lister, J Lipscombe, IC Macaulay - Proteomics, 2018 - Wiley Online Library
Cells are a fundamental unit of life, and the ability to study the phenotypes and behaviors of
individual cells is crucial to understanding the workings of complex biological systems. Cell …